SimpleSearch - Line and FST details
Line specific information
| Line ID | 388B09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N437173) |
| Segregation Analysis | 100:97:70 |
| Confirmed for Hit | At4g37900 |
| Parent of DUPLO pair | 1742 |
| Parent of pair(s) | none |
Gene hit At4g37900
| Sequence (A. th genome BLAST matches underlined) | >66-K018255-022-388-B09-8409 TGATCTGANATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGTACATCCTTAT GGTAAAGCTGTGGGCGTTACTCGTATTTGAACGTTCGGTTCTATTGAGGTAACGTTTGCA ACTTTGATCTTGTAATCAACCATTTTAGTTATTTCTGACTTGCGGTTTGTTTCAATATGT AAGCAAATGACAAATGGCTGGCTTTGCCTGGAATGGCATCTTCTTTCATACTACCTGATC TTCTTAAGAAGGAAGGCTTTACTGCACCCGCACAAGACACGGTGAAAGCTAATGGAATAA CATAGGAAAGTACGGAGATTGATGTTTTGAGTCAAGAAAAACTATGGGATCCCCCNTACT CTTGAGACGTTGTGACAGTGACCATGCTATGTGATCCTCCCTATAGTGAG |
| GenBank Accession | BX286057 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17822374 - go to primer design |
| BLAST e Value | 4e-115 |
| Hit Clone Code (BAC ID) | F20D10 |
| Hit Gene Code | At4g37900 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein (duplicated DUF1399) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g05730
| Sequence (A. th genome BLAST matches underlined) | >66-K018251-022-388-B09-8409 CAATTAAGAGTTTCAACCAAGTACGAGCTAAAAAGATAAACTACTCCATTAAGCATCCAG CCCATTACTCACACTCAAATCAGAGCCTAACCTATGGGATCCTCCCTATGGTGAGACTTT GCGAAATATCTCCTCTGGGATCCTCCCTATTGCGGGATACTCCGGTAGAATCTCGGCTTA CGCGCCTTCTTTCCGTTCGATTAAATGCGTCTCTGTTTCTCCGGAAGCTTCAGTAGGTGA AGCAATGCTCTTCGTTTTTTCTTTTACTTTGGGTTTTTGATTGTTTGATTTTTTACCGAT CAGATGCGGGAAAATGGTTGAACGACATTTATGTCAAGCTTATAATTTCTATTCTCTGAC TAATTTGATTGGTTTGATTGTGAATGTGAATCTTCTTAAGCGTGAAAACAGGTCTGATAC ATGTTTTTGGACTTGTTCTCTGCAGTAAGTGATACCAAGAAGTTGGCAGATGCTTCTAAG AGTACAAACCTTATACCAATTTACCGCTGTATATTCTCTGATCAGCTTACTCCTGTTCTT GCTTACCGGTGGTTGGTCCAAGAAGATGACCGTGAAGCTCCTA |
| GenBank Accession | BX286056 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:1722838 - go to primer design |
| BLAST e Value | 1e-145 |
| Hit Clone Code (BAC ID) | MJJ3 |
| Hit Gene Code | At5g05730 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | anthranilate synthase alpha subunit 1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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