SimpleSearch - Line and FST details
Line specific information
| Line ID | 389C02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N437274) |
| Segregation Analysis | 50:41:39 |
| Confirmed for Hit | At4g37270 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g37270
| Sequence (A. th genome BLAST matches underlined) | >11-K018268-022-389-C02-8409 TTCCCGGACTGAAGCCTGTATGATGGCTTCAAAAAAATGTTTACTTTTGGGGAACTTTCT TCTTATTGTTGAGACCATGGACTCTCCTTGCAGTATTCTCGGATATAGGGTGGGTTGGTC TATTCCGTAAACATCTTGTTTAGCCTGGCGAAATGTGCTGGCTCAAGCAATCTATGGGAT CCTGCCCTATATGGAGATGATGATGAATGAATGGCGCATATGCTACGCCATCGTCATATC TATGAACACCTCCATATTGCCACTAACTATTGGATATCATTTTCCTTTTGTCCATATCCC GTTGAAAACGTGGTTTATTTTCTTTTTCCTTTTTTTTTGCTATGTAAAGGTAGTATCTTC ACGTGTAAGTGTGTAACCCCACCGTGTGTAACTATAATAGGGAATATTGCTAAAAGGTGC ACAGGTTCTATGGGAT |
| GenBank Accession | BX286189 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17544478 - go to primer design |
| BLAST e Value | 3e-51 |
| Hit Clone Code (BAC ID) | AP22 |
| Hit Gene Code | At4g37270 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | heavy metal atpase 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T28I19
| Sequence (A. th genome BLAST matches underlined) | >11-K018261-022-389-C02-8409 ATTTCCCGGACTGAAGCCTTTACATTGAAACCAAAATTGGCTTTGAGTTTTTTGACAACT CAATTATTGGGTACAGATTGAAACAATTGTATTTTGTTTTCCCAAAAAAGCAAATAATTA GCCAAAAAAGAAACAAAAACATTGGGAACAAGGAAAAAAATAGTGGGTAAAAAGGTAAAT TTGGGTAAGATGTGGTGAATAAATGAAGTAGGAGGACATTGGGTGGCGTGTGGGAGGATG TGGGACACATGAAGAGTGTCGACATGATAGGTGAGAGATATGATACTAGATAGGTTCTTT AGTCTTAGGGTTAGACTTTTGTGACTTTTGTTAGACACCTACCTAAGTGGTTTTGTCGTC AAATCTGTTTTTAGGACTTTGGTTTTGGGTAACAATTTTAATCATAGCCTATAAAGCTCA TGCTCTACTCTACTATACACATGTGAACTCATCTTATGGAATTTCCTCTCTTTGTCATCA GGTGCGCCGAGTCCATTTATGCCTATCGGATCCTCCCGGGTCAATAGAGACAAAAAAAGG GCGTCATTCCCACTTTTTTTCCTTTCGGAAGGGGGGAACACCCCCACCCCTTTTATATTT TCAACGAATTTTTTATAAAAACGACAA |
| GenBank Accession | BX286188 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17730593 - go to primer design |
| BLAST e Value | 8e-144 |
| Hit Clone Code (BAC ID) | T28I19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | BX286188 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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