SimpleSearch - Line and FST details
Line specific information
| Line ID | 389G01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N437321) |
| Segregation Analysis | 50:50:41 |
| Confirmed for Hit | At3g07330 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3929, 3944, 3957, 3958 |
| Note |
Gene hit At3g07330
| Sequence (A. th genome BLAST matches underlined) | >07-K018268-022-389-G01-8409 AATTTGCTTATTGCTTTCGCCTATAAATACGACGGATCGTAATTTGTCGTTTTATCGAAA TGCACTTTCATTTTATAATAACGCTGCGGACGTCTACATTTTTGAATTGAAAAAAAATTG GTAATTACTCTTTCTTTTTCTCCATATTGACCATCATACTCATTGCTGAGGAATGTTGAT TTAGGGAAAAAAAACTTATCTGGCAAATGGTACGATGACAGATTCGATGCATAGAGGATG TATTGAGGCCGGAATACGAATTTCAACGGGGAGGAATGCTTCATCGTTGACGGCGTAGAG AACGAAGCGATCGTTCCTATCTCGATGCTTGTTCCGCCATTGGTGAGACTCTGTCGATCG AGGGAGAGAGACATTCGACGCAAATCAAAAGAATGATCTCTCTCAAACCTGATGATATCA GGAATCGTCTATCTGATTAGATCGGAGAATATGGGATACCATCCCCTAGAGACCCCCAAT GGGCTACACTTACTAACAATAGAAGACGTC |
| GenBank Accession | FR809367 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:2338555 - go to primer design |
| BLAST e Value | 6e-40 |
| Hit Clone Code (BAC ID) | F21O3 |
| Hit Gene Code | At3g07330 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cellulose-synthase-like C6 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR809367 [GenBank] |
Gene hit At5g67340
| Sequence (A. th genome BLAST matches underlined) | >07-K017791-022-389-G01-8409 CCTATGGGATGCTCCCTATAGTGAGAACCTATGGGATCCTCCCTATAGGAGAAATGAGAC ACTTGGGACCTCCCTCTAATGAGAAGCTACATACAGTGGCCTCTATCTCACATCTAAAGA ACTGAATAGCGATCCTCTGAAAATAAAACTCTAACTGATTCAACTTCACGAGGGAATGAC TCAATTGAGTGAAACAACTCCAATGGATGATGAGGATAGACATTGGTAGATTCACACCAA CTTGCCAGAAAAGCTCTGACGATGAAATTACGTGTCAAAGTGGTATGATATAAACCCTGC CTTGTCTATGGACAAACCATGAGTCCCATATATATAAATTTCTTGATAAAAGCACGATAC AATGATTGATAACATGCTAAAGTTGTTGCTTCAATCTTAAGATCTCGAGATCGACAAGAC TCGCAAATATCAAAGAACTCGTAACTGGACAACCTAACTGAAACTGCTTTGTCTAGATTA AGGTACTCATGCATTAGTGCTGCTTAAATAGAAACAGCTCTCCTATGGGATTCCTCTCAT TAGAAAGACTTTGCAAAAAAAGAGCTTGAAAAAATTCAATTTTTCAAAACGCAGTTAAAA A |
| GenBank Accession | FR809366 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:26866397 - go to primer design |
| BLAST e Value | 4e-56 |
| Hit Clone Code (BAC ID) | K8K14 |
| Hit Gene Code | At5g67340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ARM repeat superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 400G01 |
|
Last Updated on 10.06.2021 13:37 |
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