SimpleSearch - Line and FST details


Line specific information

 
Line ID 390H01
Vector Used pAC161
Line Availability available as T3 set from NASC (N437429)
Segregation Analysis 50:9:7
Confirmed for Hit At4g24630
Parent of DUPLO pair none
Parent of pair(s) 2470, 94946, 94948

Gene hit At4g24630

 
Sequence (A. th genome BLAST matches underlined) 
>08-K018269-022-390-H01-8409
TCCTCCCTATAGTAAGAAGATACCAATAAATGGACCCTCTCTCTTTTGCAGAAATTCATC
CGGGGATGGGAGTATTGCATATTTGGACGCAGCATGCTCATGGGATCCTCCCTATCTCGA
GAGTGCTTGGCATTCCGTGCGATAATGACTTCTGTTCAACCACCCAAACGTCGGAAAGCC
TGACGACGGAGCAGCATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCC
TCCCTATAGTGAG
GenBank Accession FR809402 [GenBank]
Graphic View Graphic view of gene At4g24630
Predicted Position of Insertion Chr4:12715292 - go to primer design
BLAST e Value 4e-13
Hit Clone Code (BAC ID) F22K18
Hit Gene Code At4g24630 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DHHC-type zinc finger family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g15570

 
Sequence (A. th genome BLAST matches underlined) 
>08-K017793-022-390-H01-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGGTTATTAGAAT
TCAAATTGAACATTTGGCTTGATTAAAAAACTATAATCAAAGTCCAAAGACATGGAATCG
TTAGCAACAAACTTCATTACACGAGTAAATTTCTAAATTGTTTAAGGAATTGCTTAACTG
GAACTAAGTAAAACATCGGACACGTGTCAGGAGAGTACAGCATTGTCACGAGATCTCTAT
CTGCTCGGTCGTGAAGTTACCATTCCCTCTTTCCTTTAGTCATCTGCTTCCGCTTAAAAG
TTGGGGACGAAAAACTCACTCTTTCAATATATCTCTCTGTCTCTCTCTCGCTGGATCGAG
GGGGTTTAAGCTGGTTTTTTTTTTTCGTGGCCCTA
GenBank Accession BX286450 [GenBank]
Graphic View Graphic view of gene At5g15570
Predicted Position of Insertion Chr5:5065942 - go to primer design
BLAST e Value 7e-160
Hit Clone Code (BAC ID) T20K14
Hit Gene Code At5g15570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Bromodomain transcription factor
Insertion Classification Promoter
Confirmation Status unknown


Last Updated on 10.06.2021 13:37