SimpleSearch - Line and FST details


Line specific information

 
Line ID 390H08
Vector Used pAC161
Line Availability available as T3 set from NASC (N437436)
Segregation Analysis 50:49:47
Confirmed for Hit At5g55400
Parent of DUPLO pair none
Parent of pair(s) 4022, 4109, 9886, 9907

Gene hit F4D11

 
Sequence (A. th genome BLAST matches underlined) 
>64-K018269-022-390-H08-8409
TGATCTGANATTTCCCGGACATGAAGCCATTTACATTGAAATCAGAACTCTATGAACAAA
ACCACCCTTCTCTATCTGCAACTCTTCAAAAGGTAAGATGATGGGCTTGAGTAGCCTCCC
GGAGAAGCCGAAGGTACCTTAGCTTTCCCTGGTGTCCCACAATCGCTGAAGTCTAAGGCG
CGACACTCCACCTGCATTCCACAGAGAATTGGTTCACAGTACGTCAATTTATAAACTCAA
AACTGTTATTCCTTTTAATCTACCAAGTTCAAGATCCAATTTCAACATTAAGCTATGGGA
TCCCCCCTATAGTGAGANNNNNNNNNNANNNANANNGNNNNNNTNNTGNNNTNNNNNANA
ANNNNNAAANAANNNNAAAGGANTTGAAAAAANAATGGAAATTTAAAAAAAAAAATAAAT
TATAGTNGGGTATATTAATGGGGTAAAGGAAATAATATGTGTGGAGAATTGAGATATTTT
AATTGTAAAG
GenBank Accession BX286463 [GenBank]
Graphic View Graphic view of sequence BX286463 of line 390H08
Predicted Position of Insertion Chr4:15795673 - go to primer design
BLAST e Value 2e-141
Hit Clone Code (BAC ID) F4D11
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g55400

 
Sequence (A. th genome BLAST matches underlined) 
>64-K018262-022-390-H08-8409
CTGAGCATGTACATAGATATTTTCTTATGTACTGGTTTCTTACCACTATGGGATCCTCCC
TATAGTGAGATTTTCTCACTTCTGTATGAATCGCCCAGCTGGTACGACGGAGCGATCCCC
GTGCGGAAGATATGAATTTTTTTGAGAAACTAGGGGATACTCCCTAATGGCAGTGCGCGG
GenBank Accession BX286462 [GenBank]
Graphic View Graphic view of gene At5g55400
Predicted Position of Insertion Chr5:22457097 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MTE17
Hit Gene Code At5g55400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Actin binding Calponin homology (CH) domain-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37