SimpleSearch - Line and FST details


Line specific information

 
Line ID 391D01
Vector Used pAC161
Line Availability available as T3 set from NASC (N437477)
Segregation Analysis 50:47:37
Confirmed for Hit At4g09300
Parent of DUPLO pair none
Parent of pair(s) 7999

Gene hit At2g17975

 
Sequence (A. th genome BLAST matches underlined) 
>04-K018263-022-391-D01-8409
GGACATGAAGCATTTTTCTCTTAATATGATGATGTGAGAGTGTGAATGAAATTTCTCAGA
TTATTTCTCTGATGATGATTCGTGTTTAAACTATGGGATCCTCCCTATAGTGAGACCAAG
ATCCTGTAGAACTTATCGCTAGAATAGTCGTATGGTATCCTGCCTATCTTGAGAGGGTTG
ATACGAGAGATCCCTATTTCCCATCAATCCATGAGGAAGCGGCCTTTCTTTAGGATCTAC
CCCCACGTGTAGAAATTGGTCACTCGGTAAAGATACATGTACTTGGTGTCCTGCCCAATA
GAGGGAGCCAGGTCCTATGGGAGCCTCGCTATAGAGAGACGTTCTCCCTCGCACGGAGAG
CAGAATTATCTGACCAATGGCATCCTCGCTATATTGGGCGGACGATGCTGATACTTCCCT
ATATTGCCCACATTTCTTGCACTTTTCGCGTGATGCATAATTGTTGGTAGTACAACCTAT
TGCCGCACCGCACCACACCACACACCCTGACGCAAAACGTATAACGATGAAGATGCGCAC
GCACGCACACCACGACGCGCCCGCCAGCAAATTTCATATACC
GenBank Accession BX286508 [GenBank]
Graphic View Graphic view of gene At2g17975
Predicted Position of Insertion Chr2:7822940 - go to primer design
BLAST e Value 4e-53
Hit Clone Code (BAC ID) T13L16
Hit Gene Code At2g17975 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation zinc finger (Ran-binding) family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At4g09300

 
Sequence (A. th genome BLAST matches underlined) 
>04-K018270-022-391-D01-8409
TTTCCCGGACTGAAGCCATTTTTCTCTTAATATGATGATGTGAGAGTGTGAATGAAATTT
CTCAGATTATTTCTCTGATGATGATTCGTGTTTAAACTAGTGAAAGGAATTTATTAGATT
CGTTCTCTTCTGATTCGGATGATGATTCATGTTTAAACTTGTGATTTGTGTAAGAACTTT
CTCAGATTCGTTCTCTTCTGATGATGATGATTCTTGTTTAAACTTGTAAAAGAACTTTTG
TTAGATTCTTTCTCTTCTGATGATGATGCTGCTTTAAAAGTGTGGAAGACATTTCTCAGA
TTCGTTCTCTTCTGATGGTGATGATTCAAGTTTAAACTTGTGAAATAACTTTCTGCTTTC
AGTTCTTTTTTCCTTTAACCAGAAACAGCAGAGGAAGATCTTGCTATGGGATCCCCCNAA
TTGGTGAGAANNNNNANNNNNNTNNNNCCNNNGNTCTNCNNNCACNGACCNNAAAATCGG
ATGGGCTCTACTAGCGTGACGGGCTCTTCCGTGTAAACGAAGATTTTCGT
GenBank Accession BX286509 [GenBank]
Graphic View Graphic view of gene At4g09300
Predicted Position of Insertion Chr4:5899464 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T30A10
Hit Gene Code At4g09300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation LisH and RanBPM domains containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37