SimpleSearch - Line and FST details
Line specific information
| Line ID | 391E05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N437493) |
| Segregation Analysis | 48:46:43 |
| Confirmed for Hit | At3g14080 |
| Parent of DUPLO pair | 2373 |
| Parent of pair(s) | none |
Gene hit At3g14080
| Sequence (A. th genome BLAST matches underlined) | >37-K018263-022-391-E05-8409 ATTCTACATTACCTTACTACTAGAGGAGCCGCACAAATTTGAGTTTTTTTTGTCTCGTGT AAATACACAGCCAATGCGGTCCTATGAGATCCTCCCAATAATATGCTGATCAACATATGG ATCGTGATCAGCACTTGTCAGAGCTTCTCCATGGTACTGTTGCCGTAAAGTAACGGCTAT AGATATAACTATGAGATGCATCATATCTACATCGGCGACGTCATAATAATAATCATGGAT AGGGGAATGTCTGAATGAACATTGTATTTTTTGAGGATGCACGAATAACCGCTAATGAGA TCCTCACTATACCGAGGGGACCCCCGCTATAGAGAGCTATATTTCCAGGGGAAGCCACCC TCAGGCCGAGTAAATACCTAGAATTGGTTGCTAAATTAGGTTCCCAATGGCGTCCGGAGC CATCACGGTCAATGATTGTAAATACTTGAATTCATACGGCCCAACCAATATGTGAAACAA AGAAAAAAACAGACCGATTTTAGATCGGGAAAACCATGGGAACACCCCCTATAGGGAGGA GAGATGCCACCAAATGGAGAAGGAGCGCCTACCAAAGGCCAAGAAAG |
| GenBank Accession | BX286531 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:4668320 - go to primer design |
| BLAST e Value | 1e-06 |
| Hit Clone Code (BAC ID) | MAG2 |
| Hit Gene Code | At3g14080 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Small nuclear ribonucleoprotein family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g55340
| Sequence (A. th genome BLAST matches underlined) | >37-K018270-022-391-E05-8409 GAACACTCCGTTCCTTTGATCAATTCGCGATTCACTTTTCTTTCCTGTTTCTATATTACC ACCTGGTTGAGAAGCGGCAGAGATTTGACTTTTTTTTGTTCGTTGTAAATACACAACCCA TGCTGTTCTATGGGATCCTCCCTATCGAGAGACTATGTTCTTACAAAAACAAAAGGCTGC ATCATAACGCAGCAACGTTACATGGAAAAACTTACGTCAAAAGTGATGAAGGCAATACCA CTGAAAGCCCCATCTTCAGGACGCATCTGGCAATCAACTTTAATGATGACTCCACAGCTT CTAAAGTAGCTACGAATCTCATCTTCTGTACTCTGATAAGGAATACCCCCAACATATAAC TTGTTAGGAACAACCCCATCTTCTTCTTTACTGGAAAACAAAACACCAAGTCGATTAATT TACATAAAATTGAAACTAACAGAGCTTTAAAATGAAGTCGGTTAACACAAACTTACTTGT CTGTATTAACTTCAATCTCTTCTACCTTCACCTTCTCTTCTACATTGCCTTCCTCAGCCT TCTTTGGCGTTTTGTTTACCTTTCTCTTCTTCTTCTTCTTCTTATTTTTCTTCTTCTGGG GTTTTTGCTCTTCCTTAGTTCCTTCATCTCCTTCTAACTCGTCGACTTCCACAGCANCGN CNCTCTNTCTCTTCTTTTTAATCTTCGGATCAGTCTTCTCGCTTGACCACCATTCCCCAC TTCATTCTCTCTGATTTCGCGTCTTCTCTAGCGAAAGTTCCCCATTTCTTCGTTTCTCTC TCTACAACATCTGGGTTTGTGGCT |
| GenBank Accession | BX286532 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:20516586 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T26I12 |
| Hit Gene Code | At3g55340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | phragmoplastin interacting protein 1 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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