SimpleSearch - Line and FST details


Line specific information

 
Line ID 393B06
Vector Used pAC161
Line Availability available as T3 set from NASC (N437650)
Segregation Analysis 50:50:38
Confirmed for Hit At1g27130
Parent of DUPLO pair none
Parent of pair(s) 4813, 4888, 4919, 8536, 10102, 10134, 91105
Note

Gene hit At5g27380

 
Sequence (A. th genome BLAST matches underlined) 
>42-K018296-022-393-B06-8409
TGATCTGACATTTCCCGGACATGAGCCATTTACATTGATCATATTCTCTCCACAACGACC
TCTTCACAATGTGGCATACTTGACGGCAACTTACTGATTCTCACAGATGACCATTACGAG
TATATCCACACCTGAGATATCCCACTGCGAATGCTTGTCCGCCCCTGCAACAATGAAATC
TCTTAAATTAGCTCTCAAGATGAAGGTGTAACTTCTCAAAAGACCACAATGCACACTCCT
GCTTACACACATAAGGGTTTCATCCTCCTTCGCAATCCCTTCTTTTTCGACTTCTGCTAT
GGGATCCCCCTTTTCCGTGAGACGCCATTTTCCCTTCGTCGTCTTTTGCTCCGACCACCG
CATCCTCCGCCGCANAACACTGTTTCATAAACATAAGACAAAACCCTTGAGATGACTAAT
CTATGGGATCTCCNNNTATAGTGAGANGAACGGAACCCTCCCTTAAACTGAGTCTTTGAT
ATTCTCTGGATAAACAAGCCACGTCGTGCTCCACCATGGTGAACGAAAATTTTACTTCTT
GGCATTGAGTCGCATCAGACTCTGTATGGAGCCGAACGCCAGTCTTAACGGGCAAGTTCT
GGGGAGGTCCTCTATTTGAATCTGTGACTCCTTGGGAAATGGGGGAACCTCTA
GenBank Accession BX286704 [GenBank]
Graphic View Graphic view of gene At5g27380
Predicted Position of Insertion Chr5:9669090 - go to primer design
BLAST e Value 3e-48
Hit Clone Code (BAC ID) F21A20
Hit Gene Code At5g27380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glutathione synthetase 2
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 393B05

Gene hit At1g27130

 
Sequence (A. th genome BLAST matches underlined) 
>42-K018292-022-393-B06-8409
TGATCTGTNATTTCCCGGACATGAAGCCATTTACATTGAATATATCCCGGACAACGACCT
CTGCAACGGATGGCATGGACGGGCTTAACACCTTCTTGGGCCCGAAACCTCTCGGTCCAT
TTGATCAACCCAGGTGTTGTCTCTTGCCGGAGAAACTTGACGCCGGATAACGCCTCGATC
ACGGAGATCGGACCTAATACAGCCGAACTAGCAATGTCGAGGGAGCCGATGGTCTCTCCT
CCAAAGAACCCTAATCCTTTGCTGCTCTTCTGAAACGTTTCTTCGAGTATCGCCAAACAC
TCCATCAGCTTTCCCACCGCCGCCTGTTTCCCTTCGTCGTCTTTTGCTCCGACCACCGCA
TCCACCGCCGTAAAACGCTGTTTCATAAGCCTAAGACAGAACCCTTGAGATGACTAACCT
ATGCGGTCCTGGGCGATTCTCAGAAAGCATTTCCTTGCAGCATATGGG
GenBank Accession BX286703 [GenBank]
Graphic View Graphic view of gene At1g27130
Predicted Position of Insertion Chr1:9426565 - go to primer design
BLAST e Value 3e-146
Hit Clone Code (BAC ID) T7N9
Hit Gene Code At1g27130 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glutathione S-transferase tau 13
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37