SimpleSearch - Line and FST details


Line specific information

 
Line ID 394F06
Vector Used pAC161
Line Availability available as T3 set from NASC (N437794)
Segregation Analysis 50:46:43
Confirmed for Hit At5g66480
Parent of DUPLO pair 12737
Parent of pair(s) none

Gene hit At3g06365

 
Sequence (A. th genome BLAST matches underlined) 
>46-K018293-022-394-F06-8409
AACTGCGCGCTAACCTATGGGATCCTCCCGTATAGTGAGAGATTAAGACAGCAGGACGGT
GGTCATGGAAGTCGAAATCCGCGTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTA
GCCCCGAAAATGGATGGCGCTTAAGCGCGCGACCTATACCCGGCCGTCGGGGCAAGAGCC
AGGCCTCGATGAGTAGGAGGGCGCGGCGGGCGCTGCAAAACCTATGGGATCCTCCCTATA
GTGAGATATATTTTGTATGTGTTGCCAGATTATTACGTACCATCCCATTTTGTCCAAACA
TGTACGACAAATGTAAAATCACTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX286866 [GenBank]
Graphic View Graphic view of gene At3g06365
Predicted Position of Insertion Chr3:14201312 - go to primer design
BLAST e Value 2e-92
Hit Clone Code (BAC ID) F21A14
Hit Gene Code At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation novel transcribed region
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At5g66480

 
Sequence (A. th genome BLAST matches underlined) 
>46-K018297-022-394-F06-8409
ATTTCCCGGACTGAAGCCTTTACATTGAACACCATTTACATGGATGCCTTGGGTGTGAAC
ACCATTGGTGTGATCCACCGCAATAGCCTCGGTGATAGGAAATGATAGGGATGTGGACTT
GCTCAAGGAGGGAGTATCCTCCACATCTACGTTACCACTAATCTTTTCCTCACCAGAGGT
TATCGGGTGAGAAGGCCCATCCACCTCAAAGTCCCTATGGAAAAGAACAGGCCCACGAGC
TTTGTGATTGATGATATAGGGAGATGGAGGGTACGAAGAAGGCGAATTGGGATGAGGGAT
TTCTTTATTAGTGGCATATAGAGAAGGTGACATCTGAGGACGAGTGAATGTCTTTTCTTT
ACGTTGCTTACTTTCATCATTCAGAATAGACGGCTTTGACTGCAGTGTGCTTGGAAATTT
ACTAGATAAGGACGTCCCTGAATTTAGTGATCTACCCAAAGCGGCAGCAGAAAATGTATG
CATGACTCTGCATCATTGAAGATTTCAATTAGAACTCCACCAATCGGGATACACTACAGC
GAGAGAACGCTGTTCATCTAATGAAGTAATGAACATCCAGAGAGTCGATGACGGATCAAC
TATAATCCTCATCGATGTCAAGCAATTAATAACCTATACTAACGAGCTCACCATGCTGAG
AGTTCAATTTCGGGGAAGGAGCAAACCATACAGTGCGAGATTATCAGACTAATCATTCGA
CATCCAGTAGCCTAAACTAAATTTAACAGAGATTATCACGGAACCCAGACCTTAATCATC
AGATCGAAGAGTC
GenBank Accession BX286867 [GenBank]
Graphic View Graphic view of gene At5g66480
Predicted Position of Insertion Chr5:26546032 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K1F13
Hit Gene Code At5g66480 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation bacteriophage N4 adsorption B protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37