SimpleSearch - Line and FST details
Line specific information
| Line ID | 395E03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N437875) |
| Segregation Analysis | 50:50:45 |
| Confirmed for Hit | At5g12310 T3F12 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12598 |
Gene hit At5g12310
| Sequence (A. th genome BLAST matches underlined) | >21-K018294-022-395-E03-8409 TGATCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGCAGAAAACGAG AATATGTACTTGCATAAGCAAACAGTTATTTACCTCTGCATATTTCTTTGGCAGGACCAG CCGCTTTCCAGTATCAGTTGCACTCAGGATCTTCTCAAAGAGAGGAGTGACAACGGATTC AGATCTTACACATCGTTAAGGTTCTGGTAACTTAGAAGTATCCAAAGTAAAACCTATCCC TAAAACCATTTATCTGATAGCCTTACATCCACCCTATTCTACAACCTATGGGATCCTCCC GTTATAGTGAGAGAAAATGATATACAAGCCTAGAGTAATCTCTTGCAATAAAGGCACGCC GACTGTCCAGTAGATGGAGTTAAAAGTGGAGCCTAATGTAAACAAGGATGGAAATTTTAC CTTCCATCAAGAGCGCGGTGGACATTGAGAAAATCACCTGGAAGCTTACCTTGTGGGCAG GGAGGCTTCTCCTTGTAACTTGCGCGGCGGAGTATGCACGTATTACTATATATATACCGA ATGACTCATTCCCTCTTAGAAATGAAAAGACTAAAGTCAGTATATATCCTATTTCATTTC TAATCAAACATACTTATTCTGTTCAAACGAAAGAAACAGAATAACGTTATAACAGGTTTA AAGCAAGNCCAAAGTCGATCGTTCAGGAACCTGAGATGAGAGCTAGAACTGATCTAACAA AACAAATGCCTTAAAGCACAAATGGTAACTTCCACAGGATCAGACTAATATTTGGATAAC GGATTACTTATAACCAAACCAGTATCATTCCTCATAT |
| GenBank Accession | BX286931 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3980742 - go to primer design |
| BLAST e Value | 7e-172 |
| Hit Clone Code (BAC ID) | T2L20 |
| Hit Gene Code | At5g12310 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T3F12
| Sequence (A. th genome BLAST matches underlined) | >21-K018298-022-395-E03-8409 TGATCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATACATCTCATCTATACAA TTGCGTATCAATCTTTGGAAATGAAAACGATAAAGCAATAAAATTAAAAGAAGAGATGAT TAGTAAGTGATAAACATGCACACAAACCCTATATTTATAGCATCAGAAAGTAGGCTACTA TCTTTTAAGGTTAATGACATTTAAAGAAAAAAATAATTGGTAGCTATGGGATCCTCCCTT ATAGTGAG |
| GenBank Accession | BX286932 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:5547938 - go to primer design |
| BLAST e Value | 2e-86 |
| Hit Clone Code (BAC ID) | T3F12 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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