SimpleSearch - Line and FST details


Line specific information

 
Line ID 396H05
Vector Used pAC161
Line Availability available as T3 set from NASC (N438009)
Segregation Analysis 50:47:46
Confirmed for Hit At2g23140
Parent of DUPLO pair 2667
Parent of pair(s) none

Gene hit At3g10525

 
Sequence (A. th genome BLAST matches underlined) 
>40-K018299-022-396-H05-8409
TGATCTGANATTTCCCGGACATGAAGCCTTTACATTGAATATATACTGATCTGATATACT
TGACCATCACATTATATGCTGTATATGTACTAGTCAACGCTAGTATTCTCTATGCTGGAA
CTCGACTACCTTACATATCAACAATATCACTCGTGATATGTTGCTGTTCAATATCCAATG
ATCATGGTATCCCCAGGCCATTTAATTATTAGATCCAATTTGGACGTATCGAGATTGGTT
ATAAACATTCAAATAGACTATGGGATCCTCCCTACTCCTGAGAAAAAGTTATTTATCAAT
ATTTTAAATTACAGGGATGTTAGCTATGGGATCCCCCCNTATGGTGAGAAAANNNNAAAN
NNNNNTTTTTTTTTTTTTACNACNCCCCCTCCACNTACATTCGGGGGGTGTGGTTAGAAG
GTTAGACCTAAAAAAAAAAACTTCGGGTGGGGCGGGGCGTGCGTTCAGTGGGGGGGAGGG
ATTAAGAAAAAATACTTCGCATGCGAATCCTTTTCTTCGCCGGTTCCAAAGCAGGGAGGA
AAATGGGGGGGAGGAAAGGAGAAAACTAACAATCTCCGGGAGAGGGTGCCCGGCGGCCAG
AAAACGGGGAGGGGGGGAACACCGCGCGCAGGGGAGAAGGAGGAGGAGAANACCCGGCAA
GGGGAACGGGGGGGCGGGCGCGGGCCCGGGGAGGGCCCCCGGCNTGCGCAGGCAAAAAGA
TGATCGGGCAGACACGCGAACACACCACNAGNGACGCAGAAGGGAAAAAAAGGGGGAG
GenBank Accession FR809540 [GenBank]
Graphic View Graphic view of gene At3g10525
Predicted Position of Insertion Chr3:3281325 - go to primer design
BLAST e Value 2e-12
Hit Clone Code (BAC ID) F13M14
Hit Gene Code At3g10525 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation LOSS OF GIANT CELLS FROM ORGANS
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At2g23140

 
Sequence (A. th genome BLAST matches underlined) 
>40-K018295-022-396-H05-8409
GGACATGAGCCATTTACATTAGATATCGGATATCCTAATCCCACTATGGGATCCTCCCTA
TAGTAGAGAGAACTCTTCAAAACGATCTCAGTCATGAGTGTGGCTACTTAAATTAAGAGG
AACATGATATATTAGTTATAAAAGTTTGTACCTTTTCTCTAGCCCTATGGGATACTCCCT
ATAGTGAGAGAGTAAAGCATGAGGGAGAGTCCCTGATTGCAGAACTTCCTTTTCTCGATC
GTGATTTGCGTAGAATTTTAGGGCACGAACTATGGACCGATTTGAATCGGAGAGGTGCGA
ATTCACACGGGTGTCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX287100 [GenBank]
Graphic View Graphic view of gene At2g23140
Predicted Position of Insertion Chr2:9845759 - go to primer design
BLAST e Value 1e-34
Hit Clone Code (BAC ID) F21P24
Hit Gene Code At2g23140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein with ARM repeat domain-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX287099 [GenBank]


Last Updated on 10.06.2021 13:37