SimpleSearch - Line and FST details


Line specific information

 
Line ID 397C02
Vector Used pAC161
Line Availability available as T3 set from NASC (N438042)
Segregation Analysis 50:49:37
Confirmed for Hit At5g07390
Parent of DUPLO pair none
Parent of pair(s) 5507, 5530, 5545, 5556, 5680, 72282, 72292, 72295

Gene hit At5g24065

 
Sequence (A. th genome BLAST matches underlined) 
>11-K017930-022-397-C02-8409
TATCTGAAATTTCCGGACTGAAGCATTTACATTGAATATATCCTGCCTACATTACAGCAA
TGGTGGAAGAGTAAAGTGCATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGACTC
CTTCTTCGATGAGAGCCGGCGGCTATGGGATCCTCCCTATAGTGAGACTACCNNATACCN
NAANTATCCNNTTGNNACTTTTTCTTATCCTCATATGATCCTCCAAGACTTGAAATAGAA
AAGAAAAAATCGAGGCATACCGATGGTTTTTCAATCTTTTATATTATGTAATCTATGGGA
TCCTCCCTATAGTGAGT
GenBank Accession FR809549 [GenBank]
Graphic View Graphic view of gene At5g24065
Predicted Position of Insertion Chr5:8133501 - go to primer design
BLAST e Value 2e-05
Hit Clone Code (BAC ID) MZF18
Hit Gene Code At5g24065 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g07390

 
Sequence (A. th genome BLAST matches underlined) 
>11-K017891-022-397-C02-8409
GTCTGATTCCGAATACTTTATTTCGACGTGTCTACATTCACGTCCAAGGGGGGGCTTAGA
TGATAAACTTCTCGATCGGTGCCTTGATTTCACCACTACAAAAGATTTTGATTCAAGGCT
ACTAACTTTCTTCGCCATGTAAATGTGTCGTTCGATTTCTCTATATATTTGACATGAACT
TTGAGTTTTATATTGAAGCGTGGTATGAAATTTAGGGTCGATAAGGATTCGGATGGGCGG
TTGAATGAAGCCGAAGTAAGAGATGTAGAATCTTGATTTTTGCAGTGATTAGTATTAACC
ATCTTGCAGCTCTTTGTGATCTTCATCATAAGTATATTTTCTATATGCGTATAGATTATA
ACTTTAAGTGCTTCTGCAAACGAGCTGGATAACATTCGGAGACAAGCTGATGAATATGCT
GCTTTAATTATGGAAGAACTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX287135 [GenBank]
Graphic View Graphic view of gene At5g07390
Predicted Position of Insertion Chr5:2339049 - go to primer design
BLAST e Value 3e-171
Hit Clone Code (BAC ID) T2I1
Hit Gene Code At5g07390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation respiratory burst oxidase homolog A
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37