SimpleSearch - Line and FST details
Line specific information
| Line ID | 397H07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N438107) |
| Segregation Analysis | 50:23:8 |
| Confirmed for Hit | At1g24330 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3045, 9630 |
| Note |
Gene hit At1g24330
| Sequence (A. th genome BLAST matches underlined) | >56-K017891-022-397-H07-8409 AGAAGAGATTCTCGAAAAAGGAAACTGCTTGACTTTAGCCTATCACGGGCTTGGCTTTCT CTAGGCAAGACAGGTTTATATATAACGCAGTTGCTGGCCCTTGGGATTGGGAACAAGACA TCATTTTCCCTATGGGATCCTCCCTATAGTGAGACAGAAACACAAATAATAATTGCCCCT CTTTTTTACATTCAAAAATGTCGACGTCCGCAGCGTTATTATACAATGAAAGTACCTTTT GATAAAACGACAAATTACGATCCGTCGAATTTATAGGCGAAAGCAACACACAAATTATTC CAATTCGGAAATCTTAATTTCGACGCGCCTACATCCACATCCAAATGGGGGCTTATATGA AACACTTTACGATCGATGGCTTGACTTCCCCATCCCCAACCGCCCCCCCGACCACTTCCT CACCAACACCCAACTAGCCTAATCACTACATCATACAATGTACCACCCCCCCCTCACCCT CCACCTTCCATAAAGAAATAATAATAATATAT |
| GenBank Accession | BX287182 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:8634195 - go to primer design |
| BLAST e Value | 2e-46 |
| Hit Clone Code (BAC ID) | F3I6 |
| Hit Gene Code | At1g24330 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ARM repeat superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g34690
| Sequence (A. th genome BLAST matches underlined) | >56-K017930-022-397-H07-8409 TATCCTGATATTTCCCGGACATGAAGCCATTTACATTTGTTAATTTTTTTAATTTATTCT ACTGATGGATCTGGTGAAAAAAAAGTGATGATGATGGATCCGGTGAGAAAAAGATCAATG ATCGGATCCGGCGATGGGAAAAAGAGTGATGATGGATGCCAGCAATAATGACGATGATGA TTACACACCTAATGACGATCCACAATCTACATGGTTCAAGGTTTTTAAACTTTTAGCAGC TATGGGATCCTCCCTATAGTGAGAGGGGACGTCTTTGAGACGCCTGTTTGTCTAGGCCTC TTACACAATAGGTCTTTCCTTCATCGCCATGATGGCATTAGTGAGATCCATGTTCCATTT CCAAATGCTTCACATTATTGTGACAAAAGATCTCGCAATGGAATCCTCGCTACCTAGAGC ATGTATACCTCTATGGGATCCTCTCTATACCCAGATGGGGGTCTGAAATTAAAACCTTCA ACATCTATGGATATGATACCCCCATTCCGCGGCAAACAGGAAGAAGAAGGATTT |
| GenBank Accession | BX287183 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:16556102 - go to primer design |
| BLAST e Value | 2e-67 |
| Hit Clone Code (BAC ID) | T4L20 |
| Hit Gene Code | At4g34690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | 5' region |
| Confirmation Status | failed, line belongs to a contamination group, please check line 397H06 |
|
Last Updated on 10.06.2021 13:37 |
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