SimpleSearch - Line and FST details


Line specific information

 
Line ID 400G01
Vector Used pAC161
Line Availability available as T3 set from NASC (N438377)
Segregation Analysis 50:48:33
Confirmed for Hit At5g67340
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At5g51710

 
Sequence (A. th genome BLAST matches underlined) 
>07-K017894-022-400-G01-8409
TATCATGAGATTTCCCGGACTGAAGCCATTTACATTGAACATTACAGAACAACAGCATAT
AAGGCTAATATCGTTACAACGTTTACACCAAGTAAAACAAGCTATAAGCGCTTGAACTAC
ACAAGAAGGTAGTGAATACTAAATATATACGATATTACAAAAAATAAAGAGTTAAGAAAA
TACAAAAAGCAAGTCTTGGATCTGATTTGGTCAGTTTCAAATGATTTTTCTGCCTCCTAT
GGGATCCTCCCTATAGTGAGAGGATAAATCGAATAGAACTGACCCTTTGTATTTCGATGC
TAAACAGTGCAAGTCCCCCGCCAACTTATAAAATGAGATCACATTTTGATAAAACGAGTA
ATTACGATCCGACGTATTGATTGGCGAGTCTTTAGACAAATAATGCTACTTTGGAAATCT
TTATTTCGACAAGAATACGTTCGAATGCAAAAGGGGATTTTAATAAGAATGTTTCCGATC
TATGCTTATGAACCCCATATCAACGGAAATCNGAAGGTACGCGTACTGGACAACGTAACT
GAGCCTGCTTTATGTCGCTAAGGTACTCATGCATTTGTGTTGTTAGAGAGATCAATCCG
GenBank Accession BX004735 [GenBank]
Graphic View Graphic view of gene At5g51710
Predicted Position of Insertion Chr5:21004295 - go to primer design
BLAST e Value 1e-102
Hit Clone Code (BAC ID) K10D11
Hit Gene Code At5g51710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation K efflux antiporter 5
Insertion Classification TS2TE (3')
Confirmation Status failed, line belongs to a contamination group, please check line 397G01

Gene hit At5g67340

 
Sequence (A. th genome BLAST matches underlined) 
>07-K017894-022-400-G01-8409
TATCATGAGATTTCCCGGACTGAAGCCATTTACATTGAACATTACAGAACAACAGCATAT
AAGGCTAATATCGTTACAACGTTTACACCAAGTAAAACAAGCTATAAGCGCTTGAACTAC
ACAAGAAGGTAGTGAATACTAAATATATACGATATTACAAAAAATAAAGAGTTAAGAAAA
TACAAAAAGCAAGTCTTGGATCTGATTTGGTCAGTTTCAAATGATTTTTCTGCCTCCTAT
GGGATCCTCCCTATAGTGAGAGGATAAATCGAATAGAACTGACCCTTTGTATTTCGATGC
TAAACAGTGCAAGTCCCCCGCCAACTTATAAAATGAGATCACATTTTGATAAAACGAGTA
ATTACGATCCGACGTATTGATTGGCGAGTCTTTAGACAAATAATGCTACTTTGGAAATCT
TTATTTCGACAAGAATACGTTCGAATGCAAAAGGGGATTTTAATAAGAATGTTTCCGATC
TATGCTTATGAACCCCATATCAACGGAAATCNGAAGGTACGCGTACTGGACAACGTAACT
GAGCCTGCTTTATGTCGCTAAGGTACTCATGCATTTGTGTTGTTAGAGAGATCAATCCG
GenBank Accession BX004735 [GenBank]
Graphic View Graphic view of gene At5g67340
Predicted Position of Insertion Chr5:26866421 - go to primer design
BLAST e Value 2e-45
Hit Clone Code (BAC ID) K8K14
Hit Gene Code At5g67340 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ARM repeat superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37