SimpleSearch - Line and FST details


Line specific information

 
Line ID 400H09
Vector Used pAC161
Line Availability available as T3 set from NASC (N438397)
Segregation Analysis 50:49:2
Confirmed for Hit At5g20290
Parent of DUPLO pair 1931
Parent of pair(s) none

Gene hit At5g20290

 
Sequence (A. th genome BLAST matches underlined) 
>72-K017933-022-400-H09-8409
TGATCCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGAAGTACATGAAG
TCATTGTTGGAGGCATTGTAGACCACATCAAGGACTCTGGTCTTGCGGGTAGTTGCTTCA
CTTCCCCACGAGTAGTTACCAGTATCGAGCCTCAACGCACGCCACTTAACATTTCCACCA
CGAACTCTTATTCTTCTGACCGTCTTGTTGCTTGAGAGCTTGGTGTTGGCTGGCTGCCTT
CCCATCTCATACCTTCACAAACCCAAACATAAAACTCACAAATCAGAACAACAAAATGAA
TCCAAGCTATGGGATCCTCCCTATAGTGAGANNNNNANNANNNNCNNNNNNCCNNTTNNT
TTTCTATTCCAACAATGTAAATGCCCGCAACTATTCTTATACAATGAACACTTCATTTTG
ATAAAACGACAAATTAATACTCCGTATAATTATGGGGGAAAAGAAACAAACCAGTTGTTC
GAATGCGGAAACCTTTATTGCCACCCGTCCACCTTCACCGTCCATATGGAGGCTAAAACA
AAAAAGTAACACGACCCATGACAGGATTTCCACAGTCCAAGGCCCCGGGCTGCCGTGTTT
ATACCTTTCCCCAACGGCAAAGAACAGACATGAGCAGGCGAGAGAGGAGGAAGA
GenBank Accession BX004752 [GenBank]
Graphic View Graphic view of gene At5g20290
Predicted Position of Insertion Chr5:6852289 - go to primer design
BLAST e Value 2e-138
Hit Clone Code (BAC ID) F5O24
Hit Gene Code At5g20290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal protein S8e family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37