SimpleSearch - Line and FST details
Line specific information
| Line ID | 401C08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N438432) |
| Segregation Analysis | 50:50:38 |
| Confirmed for Hit | At5g23575 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6830, 12029 |
| Note |
Gene hit At5g23575
| Sequence (A. th genome BLAST matches underlined) | >59-K018290-022-401-C08-8409 TGATCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATAGCTACATGATTTCCTCA GATTCTGCTTGACGGTGGATCTTGAAACTCGATGAAGCTTGACACTTCCTCAGCTCTGCG AAAGAATCAAAACCGGAATAATTCAGTTACTCTTAGGTTTGAAAAACAAAAACGCCAGAG GGATTATGTTAGTTAGTACATATACCTCTTTCGGCAATCGTCATTGCTATGGGATCCTCN CCTATAGTGAGAGAAGGNGNTTTTGGAANGAAATCCCTATCTTTTGGGGATCACGATGTT TGTTTCGATGCTTCATTCAGTGTTCGACTTCCTGGCATTCAAAAATGGTAAGTAAGACCG AAATCTTTCCTAACAATTGTAGGAATGATTGTTGAAATTTTACTAATTTTTGGCCTACCC TGCAGATATCTCATTCTGGAACGAAAATAAATCTATGGAAGGGCTGTCTGCAAAGCCTGA TGTACTGAGGTTTATCTGACAGATAGGCATCTTCCTCTACTTGATTGACAGGGAACCCTC ATGGATGATACTGGCTA |
| GenBank Accession | BX287410 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:7948697 - go to primer design |
| BLAST e Value | 2e-126 |
| Hit Clone Code (BAC ID) | MQM1 |
| Hit Gene Code | At5g23575 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transmembrane CLPTM1 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g47330
| Sequence (A. th genome BLAST matches underlined) | >59-K018291-022-401-C08-8409 TGATCTGATATTTCCCGGACTGAAGCCATTTACATTGAATATAGCTACGTGATTTCCTCA CATTCTGCTTGACGGGGGATCTTGGAACTCGATGAAGCTTGACACTTCCCCATCTCTGCG AAAGAATCATAACCGGAATAATTCAATTACTCTGAGGTTTGAAAAACAAAAGCGCCAGAG GGATTATGTTAGTTAGTACATATACCTCTTTCGGCAATCGGCATTGCTAGACGATACAAA AACCAAGTCCATATGAGAGATAGGTACCAGAATGAGCCCGATTATGTGTGTGGGATTTCT GAAATAAACTGGAACTCTGCTATGACCAACTGACATAATTGTATTTAAAGTTTCCCTGTA TTGTGGATGAAAGCAGATTATAAGGTCAAAATATTTGAGTAAACTGAATAAGAGTAAATA GAATATGATGGAAGCAAAACAAGAAAAAAGAACCCCC |
| GenBank Accession | BX287411 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:17352791 - go to primer design |
| BLAST e Value | 2e-104 |
| Hit Clone Code (BAC ID) | T3F24 |
| Hit Gene Code | At1g47330 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | methyltransferase, putative (DUF21) |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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