SimpleSearch - Line and FST details
Line specific information
| Line ID | 403B02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N438606) |
| Segregation Analysis | 57:55:53 |
| Confirmed for Hit | At2g25880 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1696, 9623 |
Gene hit At2g25880
| Sequence (A. th genome BLAST matches underlined) | >24-K035334-022-403-B02C-8409 CGTTTCTCTCTTGCTAGATAACATGGCCAAACTTTCCTCTACCAAGTGGCTTTCCGATAT CGAAATCGCTTGTAGTCCATCTCTTTTGTGCAGCCTCTGAAGCCGCCTGATACAACATTA TCACAAAGATTGAAATCCAATCAACTCTCAGATACACTTAATCATAAACGACAAACAATC ATTGATACTTTAAAACTTGAAGATAAAAGGATAAAATCAACAGCTCCTTAACACTAATCC ACGGATTTGTCAATTAATCTAGGGTCCTCGCTGTAAACGAATAAATCCACAATCATATCA TGAAATTTCTCAAAATCATACCAACAAGTCTTTCTCAAATTAAACAGAGAACATTGAAAC AAGATTCTTTCTGGCGCAAAGAAAATCAAGCAACCAAATCGATAATCCCAGATCACATTC CATTAGAACAGACCAAACGCAGAGAAAAAACGCAAACCAACAAGGAAGTAAAA |
| GenBank Accession | HG968959 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:11036246 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F17H15 |
| Hit Gene Code | At2g25880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ataurora2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX287605 [GenBank] |
Gene hit At5g02020
| Sequence (A. th genome BLAST matches underlined) | >10-K017864-022-403-B02-8409 TCCCATATAAACCAGACAAGGAACCTTTCGCAACCCAGCACCGATAATAACCAGACCGAT TTGAACAGTTCTAGACATAACAAAGAGTTTCAAAGAGCTATGGGATCCTCCCTATAGTGA GATCTTAGACACAATCCGGGCTATGGGATCCTCCCTCTGGTGAGACTTCCCAGTGTACGC CTTGGGGTTCTCGGTGTACTTGGTATCCACAGGAAAGAGACCTTTTCGACCTTTTTCCCC TGCTATGGGATCCTCCCTATAGTGAGANNNTCANCAAAACTTTCATTCGACTAGATTCAC TTCTTATCCGGCGGCGGATTTAAATGAGAAAGTGATCGACCCTTTGGTGTAGTTCGGAAT TCCAAATTNCAACGTGGCGTCCTTTCCGTCCAAATGGGGGCTTAGATGAGAAACTTCCCC GATCCATGCCTTGATTTCCCCATTTCCA |
| GenBank Accession | FR809644 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:386037 - go to primer design |
| BLAST e Value | 8e-33 |
| Hit Clone Code (BAC ID) | T7H20 |
| Hit Gene Code | At5g02020 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | E3 ubiquitin-protein ligase RLIM-like protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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