SimpleSearch - Line and FST details


Line specific information

 
Line ID 408H06
Vector Used pAC161
Line Availability available as T3 set from NASC (N439162)
Segregation Analysis 50:50:34
Confirmed for Hit At5g50570
Parent of DUPLO pair none
Parent of pair(s) 11976

Gene hit At5g50565

 
Sequence (A. th genome BLAST matches underlined) 
>48-K017980-022-409-H06-8409
AACCTACGTTCCTAACCAAACTGCTAATCCAAACGCATCCTCAGCTGTAAGAAAACAAAT
AAACCGAAATCAAAATGTTAATGGCAATCATCCATTAATTTTGTCCTTTTTGTTACAAAC
GTTATTAGGTTCTGAAGTTACAAGACTTATAAAATCTGCAAAAATATCTAAGCAAAATTT
AGTATTTTAACCATAAAAAGAAAACAAAGAACATGTGGAGCAAGTGAAAAACTCTCATAT
GTCAATGATTCTCGTGAATTACTATGGGATCCTCCCTAATAGTGAG
GenBank Accession BX288180 [GenBank]
Graphic View Graphic view of gene At5g50565
Predicted Position of Insertion Chr5:20581945 - go to primer design
BLAST e Value 1e-142
Hit Clone Code (BAC ID) MBA10
Hit Gene Code At5g50565 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At5g50570

 
Sequence (A. th genome BLAST matches underlined) 
>48-K017955-022-409-H06-8409
CACTGAATTACTTCCGTTACGGCATATGGTGCAAGATAAAGTGCATGGTGACGGTGTTCG
GCAGTTCTGAATCTCACCGAGGACTCCTATCTATCTATGAGAGCCGGCGGCTATGGGATC
CTCCCTATAGTGAGAACATAATCGAAGACGACGGAAGCCGCAGCCTGAACATATCGGTCG
TCCTGCCAACTTCTTTACGGGTTTTCAAGGTTTCTGTTTTAAGAAAAGTTAGTTAGTTTC
TTGAATCCAATAGACCGTTCCTTGTTGATGAAGAAGCATTGTTTTATGTTTTCAGGTAGC
AAATTGCTATGGGATCCTCCCTATAGGGAG
GenBank Accession BX288179 [GenBank]
Graphic View Graphic view of gene At5g50570
Predicted Position of Insertion Chr5:20583344 - go to primer design
BLAST e Value 1e-93
Hit Clone Code (BAC ID) MBA10
Hit Gene Code At5g50570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37