SimpleSearch - Line and FST details


Line specific information

 
Line ID 409E04
Vector Used pAC161
Line Availability available as T3 set from NASC (N439220)
Segregation Analysis 50:48:44
Confirmed for Hit At2g29065
Parent of DUPLO pair 12138
Parent of pair(s) none

Gene hit F9C16

 
Sequence (A. th genome BLAST matches underlined) 
>29-K025985-022-408-E04-8409
ATTAGCACACCGCTCTTCGTAATCTTCAGAGTCATGCCCGGCTTTAATAACAAAGCCATC
TGCAAACCCAAATTTCTTTTCAGCTTGACGAGCCAATCGCAAGTTTATGGACCATTTATC
ATAGTTAAGCCTAGGAATCAAGGGTTGAGAGATACTACTTCCATGATTATCACTGACAGC
ATCATCTCATGGGATCCCCCCTATACCGAGTGCATCAAATTCCACCTAGAATTTTACTGC
ATCATTTACCGAGCCAATTACCGTAGGGCATCCTCCCTATACTGCGATCCGGATTGNTTC
CC
GenBank Accession CR396961 [GenBank]
Graphic View Graphic view of sequence CR396961 of line 409E04
Predicted Position of Insertion Chr1:16667892 - go to primer design
BLAST e Value 8e-35
Hit Clone Code (BAC ID) F9C16
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit CR396961 [GenBank]

Gene hit At2g29065

 
Sequence (A. th genome BLAST matches underlined) 
>29-K025965-022-408-E04-8409
CCTGCCATTGCCTGTATATCGCAGGACTCTCCAGTCTATCAGCTTCCTCGCACGCTATCA
CGTTCATAGCCTCTCTCCCGTAAAACTCCCTCTCGAACCTAATCCTCTCTTTGTTATCCC
GAGGCAGCGTCGAATCAAACATGTCCAAGAGAACGGAGTAATGGTAAACCGCTTCTTTAA
ACCGCCAGATAAAGAACGGTGCGTCGTACGAACCGTAGACAACCACGTGAATGAAATCAC
CCGACACCTCGCTCCACACTCCTCCACACCTCTTCCTCCGGCAGACATCAAATTTCCTGA
TACTTCATCATCTCCTCACCCTCATCTCCACTGCTGGCGCTCAACATATCCATATCTTCA
TAATATCTCATCAATACCCACATCCACCATACTGATAAGCCCGACATCTCCATTTTACAT
CACATTTAATACAATA
GenBank Accession CR396960 [GenBank]
Graphic View Graphic view of gene At2g29065
Predicted Position of Insertion Chr2:12486808 - go to primer design
BLAST e Value 7e-88
Hit Clone Code (BAC ID) T9I4
Hit Gene Code At2g29065 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GRAS family transcription factor
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX288085 [GenBank]


Last Updated on 10.06.2021 13:37