SimpleSearch - Line and FST details
Line specific information
| Line ID | 410E04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N439316) |
| Segregation Analysis | 50:49:45 |
| Confirmed for Hit | At5g19025 |
| Parent of DUPLO pair | 12082 |
| Parent of pair(s) | none |
Gene hit At5g19025
| Sequence (A. th genome BLAST matches underlined) | >29-K017999-022-410-E04-8409 TGATCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGATGGTGCACTGC TTTATTTGGTGATTCCTAAATTCATCATAGCTGCTTAGAATTCTTGATTTTAATATCTCT TTAGGATTCCATTTTGATTCACTGTGACTATGGGATCCTCCCTATAGTGAGACCCCAAGA CAACGACGGAATCCTTGCTATAGACATATCGATCAGCGAGACACACACTGAAACTGATGC TTCCTACAAAATACCACCTATAGGATCCTCCCTATACTGAGAACTTGCATGTGGGACAAT ATGGAAACTGACCGTTCTTACTAATTTCTTCCATCCTACTACATCTTTTGGTTTCCAGGA ACTGGAGATAGCCGAATAATTCACGGCCCATGGGATCCTCCCTATAAAGAGAGAACCCCA CAATCGAAGCCTCGCAATTCGCGATCCCAAGGGGGCNGCATTCNNNNGAAAAGGGGGTCT AAAATGAAAAAAC |
| GenBank Accession | BX288215 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6355424 - go to primer design |
| BLAST e Value | 1e-47 |
| Hit Clone Code (BAC ID) | T16G12 |
| Hit Gene Code | At5g19025 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribosomal protein L34e superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g19030
| Sequence (A. th genome BLAST matches underlined) | >29-K017995-022-410-E04-8409 TGATCTGAGATTTCCGGACATGAAGCCATTTACATTGAATATATCCTGATGGTGCATTGC TTTATTTGGTGATTCCTAAATTCATCATAGCTGCTTAGAATTCTTGATTTTAATATCTAC TTTAGGATTCCTTTTTGATTCACTGTGGCTATGGGATCCTCCCTATAGGGAGAGCGATCT ATACCAAGTCATTTCGATTGATGCGTGACGGAACTGCAAGAAACTGACTGAAAATCTGGG TGACAAGGGTTTGGCCGAAAGAAAGTTTAAACTAATTCAATGAACTTGCATGTTTGATTA TATGGAAACTGACCGTTCTTACTAATTTATTCCAAATTACTACGTTTTTTGGTTTCCAGG AAATGGAGATAGTCGAATAATGAACGGTCTATGGGATCCTCNCTATAGTGAGANNNNNNN NNNNNNNNTNNTNNNNNNTTTTTTTTCNNTTCANAAATGTNNATGNCCNNANCNATATTA TAAAATGAAAGTACTTTTTGATAAAACAACAAATTACCATCCCTCTGATTTGTGAGGGAA AGCAATAAACAAATTTTCTAATTCGGAAATCTTTTTTTCGAAGTGGCTAC |
| GenBank Accession | BX288214 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6359225 - go to primer design |
| BLAST e Value | 1e-114 |
| Hit Clone Code (BAC ID) | T16G12 |
| Hit Gene Code | At5g19030 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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