SimpleSearch - Line and FST details


Line specific information

 
Line ID 413A11
Vector Used pAC161
Line Availability available as T3 set from NASC (N439563)
Segregation Analysis 50:40:26
Confirmed for Hit At5g15510
Parent of DUPLO pair 12652
Parent of pair(s) none

Gene hit T1B3

 
Sequence (A. th genome BLAST matches underlined) 
>81-K025921-022-413-A11-8409
TTGGAGGATTGAAAAAACAAAACTATTTTATATCTTTTGAGATTAACCCGTGACACGTAA
TACTGATTCACAAACCCGCGTCAATAAGTAAAAAGGTTGAAAATGTAATTGTTTCATAAA
TAATCCAAAATACAAAAAACAATGTATCGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR397008 [GenBank]
Graphic View Graphic view of sequence CR397008 of line 413A11
Predicted Position of Insertion Chr2:12151995 - go to primer design
BLAST e Value 7e-54
Hit Clone Code (BAC ID) T1B3
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit CR397008 [GenBank]

Gene hit At5g15510

 
Sequence (A. th genome BLAST matches underlined) 
>81-K018003-022-413-A11-8409
TGAGCATTTACACTTGATATGTCAGCATTGACTATGTAGGTTCTAATGTTGTTTTCTGTT
TCAGTGCCTATGGGATCCTACGTATAGTGAGANNGACAANAAANAGAATTACCTTTTTTT
TTATAATTAAAAAACGGACATCTCCCCATCTTTATTATAAAAAAAAAGGACATTTCGCTA
AAACGTACCAACTACTATCCCTCCATTTTACAGGCGAAAGCAATAAACAAATTCTTCTCA
TTCGGAAATCTTCATTTGAACTTGTCTCCATTCACGTCCAAATGGGGGCTAATATGAAAA
ACTTCCCGAGCTATCCCTT
GenBank Accession BX288386 [GenBank]
Graphic View Graphic view of gene At5g15510
Predicted Position of Insertion Chr5:5035607 - go to primer design
BLAST e Value 2e-08
Hit Clone Code (BAC ID) T20K14
Hit Gene Code At5g15510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation TPX2 (targeting protein for Xklp2) protein family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37