SimpleSearch - Line and FST details


Line specific information

 
Line ID 414B11
Vector Used pAC161
Line Availability available as T3 set from NASC (N439671)
Segregation Analysis 50:38:26
Confirmed for Hit F9E21
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At2g46400

 
Sequence (A. th genome BLAST matches underlined) 
>82-K026070-022-414-B11-8409
ACATTAAGCATTTACATTGAAGATATCCTGTACAGACATACTCACTGTGAATCCATCCCT
ATAGCGAGACTTAAGAGACTCAGTTTGCCATCGGCGCTATTATGAGATCCTCCAGTTATT
TTTAGGTATGCTCTCCCCCCATTCTCTAGCCGTATTATAATGGCATTCCCTATCGAGTAT
AAAGTTATCCTCACAATGGCGTTCCGCATACTACCGAGGATAGCAAAAATCACGGTTTTT
TTGGAATCCACTAAAAAAGTGTGTTTGACATTGTTCATCAATCGGTTAGCAAGCTCTTTC
CGTATGGGATCCTCCCTATAGTGAGANGTNTNANNCN
GenBank Accession CR397116 [GenBank]
Graphic View Graphic view of gene At2g46400
Predicted Position of Insertion Chr2:19044440 - go to primer design
BLAST e Value 2e-14
Hit Clone Code (BAC ID) F11C10
Hit Gene Code At2g46400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation WRKY DNA-binding protein 46
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 038C07

Gene hit F9E21

 
Sequence (A. th genome BLAST matches underlined) 
>82-K018043-022-414-B11-8409
TGATCTGANATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGCCACACCTATGT
ACGGTAAGAATGCACATTTAGGTGGATAGTTTCTCGGCTTTTCCGGTTATTATTAGCTAT
AGATATAGGGAGTTTCGCGGCACGCCCACCGATTATTCCATAATTAGAGTTTGAGTTTAA
GAATGGTTCGATAAAAACCTATGGGATCCTCNCTATAGTGACGACAGATAACCTATGGGA
TCCTCCCTATATTGAGAGGACATGAAGCCATTTACCCTCGAATATATCCTGCCACACCTA
TGCACGGTGAGAATGCACCTTTAGGCGATTCGTTTCTCTGCTTGTCCGAGGAATATTACC
TATAGATCTATGGAGATTCGCGGAACGCCCACCGATTATTCCATAGTCAGAGTGGGAGTT
TAGAATAGGATCTTAAAGAGCTATGGGATCCTCCCTAAAGAGAGANNGNNNNCCCTATGG
ACACCTTCGGGGNGGCCCGCGGCCAGCGNCCTCGTCCGCGCGACCCGCAAAACNCGGACA
AACGCCAAAATTCCACACCTTACAC
GenBank Accession BX288425 [GenBank]
Graphic View Graphic view of sequence BX288425 of line 414B11
Predicted Position of Insertion Chr4:3149709 - go to primer design
BLAST e Value 2e-73
Hit Clone Code (BAC ID) F9E21
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX288424 [GenBank]


Last Updated on 10.06.2021 13:37