SimpleSearch - Line and FST details
Line specific information
| Line ID | 414F03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N439711) |
| Segregation Analysis | 50:39:37 |
| Confirmed for Hit | At1g64100 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 8606, 11302, 11311, 84909, 84930, 84999, 85001, 85002, 85006, 85011, 85013 |
Gene hit At1g64100
| Sequence (A. th genome BLAST matches underlined) | >22-K026073-022-414-F03-8409 TGAGCCTGAGGCGTATCATGTATTTGTTACGCAGCTTCCTAGTATCCGACCGAGAGGGAG CCTTAGTACGAATTCACCGGATCATTGGTTTCAAAGATATGGAATCCCCCCTATAGAAGT TCCATCTACCGGGAGAGAGAAGCCGCCACCTCGGGACGATTCATTGTCACGAGGATACTC ATTACGTTAATGCGATCAGCTGACGTATAGAAGGCAACGCATCGCTGGTAGTAAGGCGAG GAAGACAGTAGGTTACACGAATGGGTGGGGGGGGGGAGAAAACAATATGTTCAATTGAAA GGAGGACGACAGTAAAGAGAGCAGAGGACGATAGAAGAATGGGG |
| GenBank Accession | FR809861 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:23792224 - go to primer design |
| BLAST e Value | 2e-08 |
| Hit Clone Code (BAC ID) | F22C12 |
| Hit Gene Code | At1g64100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | pentatricopeptide (PPR) repeat-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g17570
| Sequence (A. th genome BLAST matches underlined) | >22-K018043-022-414-F03-8409 TATCATGAAATTTCCNGGACATGAGCATTTACAATTGATGATACGTATCATGTAGATTAG AAATGGATCGTTTGATATGATACGTATCTACATTTGTAGAACTGATTTTTTCACCTATGG GATCTCCCCTATAGTGAGATTCAACACACTGATAAATGGTCTCTGCCTATGGGATCCTCC CTATAGTGAGAGGNANNNNCNCTATCATTTGCACCTTCTTTCCATAAAACACATTGCAGA TCCCTGTCGATTTTCCGGACAGGAAGCCATTTACAATTGTCGATTCCGAAAATCTTTATT GAAACGGGTCGCCTTACACGACAAATGGGGGCCTTAATAAAAAAACTTCTTAATCATGTC CTAACCTCCCCATCCCAAGGGGGGCTTANATGAGAAACTTCACCATCCATGCC |
| GenBank Accession | BX288448 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:7644705 - go to primer design |
| BLAST e Value | 5e-25 |
| Hit Clone Code (BAC ID) | MJB20 |
| Hit Gene Code | At2g17570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Undecaprenyl pyrophosphate synthetase family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At1g33660
| Sequence (A. th genome BLAST matches underlined) | >22-K018037-022-414-F03-8409 AGAAGTGGATCGTTTGATATGATACGTATCTACCTTTGTAGAACTGAGTGTTTTCACCGA GATTCATCCTCCCTGTCAATGACATTCACACCACTGATAAATGGTACTATGTATATGGGA TCCTACCTAAACTGAGAGGGGATAGTGCAAGCCTCTATATCCTTCGTATCTAATTGCGGT AAAGGAGAGAGAGGAAGATACTTGACCTTAACATTTGTATGTCCTTGCTATGGGATCCTC CCTATAGTGAGAGNNNNGNNAANNCNNNAAAAATTNATTCTTATTCGAAAATCTTTATTT CGACTGGTCTACTTTCACGACCCAAGGGGGGCTTAGATGAGAAACTTCACGATCGATGCC TTGATTTCCCCATTCC |
| GenBank Accession | BX288447 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:12197276 - go to primer design |
| BLAST e Value | 1e-44 |
| Hit Clone Code (BAC ID) | T1E4 |
| Hit Gene Code | At1g33660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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