SimpleSearch - Line and FST details


Line specific information

 
Line ID 417B05
Vector Used pAC161
Line Availability available as T3 set from NASC (N439953)
Segregation Analysis 50:43:42
Confirmed for Hit At1g62520
Parent of DUPLO pair none
Parent of pair(s) 2713, 94715

Gene hit At5g32450

 
Sequence (A. th genome BLAST matches underlined) 
>34-K018046-022-417-B05-8409
TTTCCGGACATGAGCATTTACATTGAATATATCTGTTTTGTTTAGGTTAGGTTTACTGTT
TTAGCCGTCGTTTTAGTGTTTTATTTCTGTATGTAACCTATGGGATCTCCCGTATAGTGA
GACGAANCAGATTATAGTATCGCCGCTTACTTCTACATTCAAAGAAGTGAAAAAACAACG
GCGATTACATCAAACGAAATCACCTTATTGACACAACAACACATAGCTGATCCATGTATA
TTTCCCGAACATGAAAACATTTACAATTGAATA
GenBank Accession BX288556 [GenBank]
Graphic View Graphic view of gene At5g32450
Predicted Position of Insertion Chr5:12079559 - go to primer design
BLAST e Value 2e-19
Hit Clone Code (BAC ID) F18O9
Hit Gene Code At5g32450 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA binding (RRM/RBD/RNP motifs) family protein
Insertion Classification TS2TE (5')
Confirmation Status unknown
Other FSTs Supporting this Hit BX288556 [GenBank]

Gene hit At1g62520

 
Sequence (A. th genome BLAST matches underlined) 
>34-K018040-022-417-B05-8409
TGATCCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGCCCGGATAAACG
AGAAACCGACCCGGTTTTATCACCATCAACCCGGATCCGATCAACCGGAGTTCGTGATCG
TGATCCGTTTTTACCGACATTGACGGAGCTATCGGAAGGTCATCAGTCACGTAATGTGGT
GGAGATTATCTTTCAGACGAGCTGGGGTCCGAAACCGTTTTCGGGTCGGGTCGAAATGAT
TTTCAAAGTGCAAAACGGGTCTAAGACTTTGACCCGGTTCGAAGAGTATCGTGAAGCCGT
GAAAGCTATGGGATCCTCCCTTATAGTGAGGAANNANNATCCNNTATANTGAGANTTTTT
TTCTCGATTCCAAAATGAACATCTCCGAAGGGTCTTTATGAAATGAAAGTACTTTTTGAT
GAAACGGCAGATTACCATTCGTACAATTTATGGGCGAAAGCCGTAATCAGGTTATGCTAA
TTCGGAAATCTTTATGTCAACGTGGCTACATACACTTCCAAAGGGGGGCTAAGATCAGAA
ACTCCACGATCGTAGCCTAGAT
GenBank Accession BX288555 [GenBank]
Graphic View Graphic view of gene At1g62520
Predicted Position of Insertion Chr1:23144713 - go to primer design
BLAST e Value 2e-144
Hit Clone Code (BAC ID) T3P18
Hit Gene Code At1g62520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sulfated surface-like glycoprotein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX288555 [GenBank]


Last Updated on 10.06.2021 13:37