SimpleSearch - Line and FST details
Line specific information
| Line ID | 417E05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N439989) |
| Segregation Analysis | 70:43:40 |
| Confirmed for Hit | At2g43445 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 96900, 96902, 96904 |
Gene hit At2g43445
| Sequence (A. th genome BLAST matches underlined) | >37-K026069-022-417-E05-8409 GAGCCCCCCCATATAGAGACTAATCCCTCATTCCGGAATAATTTTACAGATAACCGTTTA CATGTCTCCGTGACAATTATTATATTGATTTCGGAACATTTCCAAAATATTTCCTATGGA ATGTCCAGGCTACAATGTACATGACATTCGCATGCGATCCTCCCTATACCCAGGAGGACC GTCTAGCCATGGCCATGACGACCAAAGTTGGGCCTGAATGGATACTAGAGATCTGGAGCA TGGATATAGAAGAAAAAGGATGGAGCAAGCGTTACACATGGAGCAAGGCTTACTCCATAA GTTTAGCCCATAGAGTTGTTGTATCCTGGCCATGGCAAAAAAGGTGGTTCACGCCGGTAT CGGTTTCTAAGCAAGGGAATCTTGTCTTCTATGATAATCACAAGAGGCTGTTCAAATATT ATTCAAGTATGGGAT |
| GenBank Accession | CR397351 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:18042262 - go to primer design |
| BLAST e Value | 2e-140 |
| Hit Clone Code (BAC ID) | T1O24 |
| Hit Gene Code | At2g43445 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box and associated interaction domains-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR397352 [GenBank] |
Gene hit At2g30615
| Sequence (A. th genome BLAST matches underlined) | >37-K018040-022-417-E05-8409 TATCATGANATTTCCCGGACATGAAGCCTTTACAGTGTTAATGTGAGGATGCTTACTACT AATTATTAATGTGATGAGGATATCAATAGGGCCTACGGGATTCACGTGTCTGATCGCATG CCATAAGAGAATAGAAGATTTATCCCTCATTATGGAATTATGTTACTGATAAACGTTTAC ATGTCTCAGTGACTATACATTAATCTGATCTCGGATCATTCTCCTAAATATTTCTTATGT AGTGTCCCTCGGATCCTCCCTATGGGTAGAGCAAGATACCCAATTAGTGAACCTTGAGGA CCGGCTATGGGATCCTCCNTATAGTGAGAGTTNTNATAACAAGAAATTACATTTTGATTA AACGACCAATAACGATCCGTCGTATTTTTTGGCGAAAGCAATAAACTAATTATTCTAATT CGGAAATCTTTATTTCAACGTGACTACTTTCACGTCCAAATGGGGGCTTAAATGAGAAAC TTCACTATCGATGCCACGATGCCCCCTTTCCAGCCAATTGGGGGCTTTAATGAAAACCTT CCCGAACGATGCCTTGATCCCCCCATTGCCAG |
| GenBank Accession | BX288570 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:13042769 - go to primer design |
| BLAST e Value | 1e-16 |
| Hit Clone Code (BAC ID) | T6B20 |
| Hit Gene Code | At2g30615 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box/LRR protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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