SimpleSearch - Line and FST details


Line specific information

 
Line ID 417H05
Vector Used pAC161
Line Availability available as T3 set from NASC (N440025)
Segregation Analysis 50:46:43
Confirmed for Hit At1g13250
Parent of DUPLO pair none
Parent of pair(s) 5257, 5292, 5385, 10280, 97032, 97045, 97046, 97047, 97048

Gene hit AP22

 
Sequence (A. th genome BLAST matches underlined) 
>40-K026074-022-417-H05-8409
TGGGATCCTCCCTATAGTGAGACAGTCGAAATTCCGAATTGTTACGGTTTTGTAAGAATT
GCCATAGGGACCCCCGCCAGATTCTATACCTAAAAAACTCTATTTTACCAACACCTACAT
ATACATCATAGAGAGATACGTTACTTATCCGCTACTCAAGAAGAAACTGTAACATACGGA
TTTAAGTAGGATGTTTAGGTCATCCACCGGGTATCTCCCCAACTGTAATTAGATCCAACA
AACGCTATCTTGTCATCATTCATTGAAAAGCTAATTAAGTCATTTTCTCAAAATCATGCA
TAATGACAAACAAACAAAAAAAATTACCAAAGCAACTATCAAATGGTGGTAATCTAGTGA
TTTCGGTCTATTTAATATCATAAATGAAATTTTGAAACGATTTTACTG
GenBank Accession CR397381 [GenBank]
Graphic View Graphic view of sequence CR397381 of line 417H05
Predicted Position of Insertion Chr4:17267970 - go to primer design
BLAST e Value 1e-150
Hit Clone Code (BAC ID) AP22
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g13250

 
Sequence (A. th genome BLAST matches underlined) 
>40-K026069-022-417-H05-8409
GNAGCCATTTACAATTGAAATATCCTGCGCGAAAGGGATCCTCCCAATGGGGGGGACCCT
AACGTCAGCCATTATATGGCTTACTGAATTTAGTGTGAGTTACTAATCCTGATTTGTCTC
CCGTTTGTGGAATTTCATATCTTCCCCTACGGAAGAGATGCTCCCTATAGAAATCTCTTT
TATCGGATGCCATACACAATCCATCAAGCATCCACTTCGTCTATGACTCTCGACGCAATT
TACTTCCGTGACTCAATCGCCGGCGTCTTCTCCGTTCTCCAACAGGCTTCTTGTCCTGAT
GACATCATTTTCCACTTCATCGCCCCTGACCGTCTTAGCGCCAATCTCCGCCGCATAATC
TCCTCAACATTCCCATACCTAACCTACCACATTTACCATTTTGACCCTAACCTCGTCCGG
AGGAAAATATCTTCCTCTATTCCTCGTGATTTACACCAACGGTTTTACTACGCTCGTATC
TACCTCGCCGATCTCCTCCCAATCGGCGTCCGCCGCGTAATCTACT
GenBank Accession CR397380 [GenBank]
Graphic View Graphic view of gene At1g13250
Predicted Position of Insertion Chr1:4529998 - go to primer design
BLAST e Value 2e-124
Hit Clone Code (BAC ID) T6J4
Hit Gene Code At1g13250 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation galacturonosyltransferase-like 3
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37