SimpleSearch - Line and FST details


Line specific information

 
Line ID 419F11
Vector Used pAC161
Line Availability available as T3 set from NASC (N440199)
Segregation Analysis 50:50:47
Confirmed for Hit At2g29580
Parent of DUPLO pair 12526
Parent of pair(s) 139, 8328

Gene hit At2g29580

 
Sequence (A. th genome BLAST matches underlined) 
>86-K018100-022-419-F11-8409
TGATCTGTNATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGAGAATACTGAG
AGATCACGAGGCTGATGGATGGGAACGTTCTGATTTCCCAATCATCTGTGAGTCTTGTCT
CGGTGACAATCCTTACGTGAGAATGGTATATTCTTCGCTTCCTATGTTTCTCCTCAAACA
AATTCGATTTCCTTGCCTTTAGCTGATGGGATCCCGCCTATAGTGAGACGGCTTTGGGTT
CCCAATGTACGTGCTATCCACAGGAAAGAGACCTTTTCGACCTTTTTCCCCTGCTATGGG
ATCCCCCCTATAGTGAG
GenBank Accession BX288774 [GenBank]
Graphic View Graphic view of gene At2g29580
Predicted Position of Insertion Chr2:12652020 - go to primer design
BLAST e Value 3e-82
Hit Clone Code (BAC ID) F16P2
Hit Gene Code At2g29580 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g13380

 
Sequence (A. th genome BLAST matches underlined) 
>86-K018139-022-419-F11-8409
TGATCTGTAGATTTCCCGGACATGAAGCATTTGTTCTTTATCTTCAGATGTCCCCCGATT
TACTGACTCTGGAAGAGTCTTGAATTCATATTAAAGGCACCTAATAACATGTTCGCTGTA
AAGTTGCAAGTACTTACTATTCCTCTCCTGAATATAGAAACGTATTCATCAGAATCCTAC
TATTGACGATCATAACCTAAGAATTCGAGCTATGGGATCCTCCNCCCATATGGAGAGCTT
TGGGTTCCCAATGTACGTGCTATCCACAGGAAAGAGACCTTTTCGACCTTTTTCCCCTGC
TAGGGCAATTTGCCCTATGGGATCTCCGTAATAGTGAGAGNNANNNNNNANNGAGNANTT
NCCNNTTTTTTTTCAATTCAAAAATGTAGATGTCCGCAAACGTTNTAATAAAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GenBank Accession BX288775 [GenBank]
Graphic View Graphic view of gene At1g13380
Predicted Position of Insertion Chr1:4590010 - go to primer design
BLAST e Value 5e-22
Hit Clone Code (BAC ID) T6J4
Hit Gene Code At1g13380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sodium/hydrogen exchanger (DUF1218)
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37