SimpleSearch - Line and FST details


Line specific information

 
Line ID 420A10
Vector Used pAC161
Line Availability available as T3 set from NASC (N440234)
Segregation Analysis 50:49:47
Confirmed for Hit At1g12270
Parent of DUPLO pair none
Parent of pair(s) 68766, 97238

Gene hit At4g08865

 
Sequence (A. th genome BLAST matches underlined) 
>73-K018101-022-420-A10-8409
ATGAGCATTTACATTGTACTCATTACAGATGTTATTTCATGGTATACCTTGATCTCTGGA
TTATGCTCATAACGGTTTTGCTATGGGATTCTCCCTATAATGAGAAATTAATCATCTCAT
GTGGAGCCAATTAATAAATATCAATAATCTCATGTGGAGCCAATTATGTTTTTCTATGGG
ATCCTCCCTATAGTGAGAGNAAAAATACTGATTCTTTCCATTTTTTTTTCAATTCATAAA
TGTAATACCCTCAACAGAATTATAGCTATAGTTAAAGCTGCTATGGGATCCTCCCTATGG
TGAGACAGCGCGCGTAACAACAAGACGACCCGGCTTTTTCTTAGGAATCGCGAAGGAGCA
CGAAAAAAAGCGCACATAGCACATCACCAAAAAACCCAAAGACACAATATACATAGCGCA
AAGAGTTAAGACATTTCCAACAACACAACGCAAAATCCGAGAAAAACGGGCCCAACCCGT
CACACGAACTATAAAATACACACCACAACGCACAAAAACTACGCCTGTACGCAACACAAA
AACCAATTAAAACGATACACACAACCAACAAGCCCGCACACCCAATTACTATCGGCATCA
TTAAACAAAAAACTAAACACAAACCGACCAAAAAAAAACACAAACATTCATTTAAAATCA
CATCAACACCACCATCGAAAACTCTAACATCATACCCTAAACATAC
GenBank Accession BX288805 [GenBank]
Graphic View Graphic view of gene At4g08865
Predicted Position of Insertion Chr4:16286660 - go to primer design
BLAST e Value 3e-32
Hit Clone Code (BAC ID) F17I5
Hit Gene Code At4g08865 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation long noncoding RNA
Insertion Classification TS2TE
Confirmation Status unknown

Gene hit At1g12270

 
Sequence (A. th genome BLAST matches underlined) 
>73-K018140-022-420-A10-8409
TGATCTGANATTTCCNGGACATGAGCCATTTACAATTGATATATCCTGATTGCTTGGTAT
GTTTCCATCGCATTGTCGTACTCTTTGAGGAAGAATTGGACTGCAGCTTTTCTGCTGTAT
CCTTTAGAGAAGGTTGGATCGAGCTCAATACACTTTTCTGCATCCTTTAGTCCTTCAGGC
ATTGCACCTATGGGATCTCCCCTATAGTGAG
GenBank Accession BX288806 [GenBank]
Graphic View Graphic view of gene At1g12270
Predicted Position of Insertion Chr1:4173909 - go to primer design
BLAST e Value 9e-73
Hit Clone Code (BAC ID) F5O11
Hit Gene Code At1g12270 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation stress-inducible protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37