SimpleSearch - Line and FST details


Line specific information

 
Line ID 423F04
Vector Used pAC161
Line Availability available as T3 set from NASC (N440576)
Segregation Analysis 50:50:46
Confirmed for Hit At3g60140
Parent of DUPLO pair none
Parent of pair(s) 1424, 6234, 6236, 10583, 70293

Gene hit FCAALL

 
Sequence (A. th genome BLAST matches underlined) 
>30-K017809-022-423-F04-8409
GAGATATAGTGAGANNNCNTTCNNTTACTTCTANTCCAAAAATTAAGGCGAGTAGAGTCC
CCAATAACAAACGTGTGTTTCATATACGCAACGCGAATGTCACTCTTCTGCGTTTGTATG
GATACAAGAAAAAGAAAAGAAAACAAGAAGCAGGGGAGAAGTTATATTATTGAGCTGAAG
AAACTTTTCATACCGTAACTTAAAAAAAATAAAAAAAGAATTACGTGGGCTTTATGATAT
GAACAGTTTATGGGCCTATCACGCTTATTGGGCTATACCCACTGGAACTGTCCAACTTTA
ACTTCATTAATGAGTGTTCGTTTCGGTCTGACCATACCAAACCAGAGCTGTACCGAATTT
TTGTCTTCAAAACCAAATTAAAATTTGATTAGAGTCATTCCAAGGTACTTTGATAACTAT
GGGATCCTCCCTATAGTGAG
GenBank Accession BX289126 [GenBank]
Graphic View Graphic view of sequence BX289126 of line 423F04
Predicted Position of Insertion Chr4:8472713 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) FCAALL
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g60140

 
Sequence (A. th genome BLAST matches underlined) 
>30-K017847-022-423-F04-8409
ATTTCCGAATGTGTCTTATGGTATTCATCCTAAATGTGTCCTTCACAATTTCTTCTCTTG
GTTTTGTACCGTCGTCGTTGTCATTAATTCCTGTAATTCAGTAATCAACGTAAATTATTA
ATAGTCACACCATTTTTTTTTTTTTTAAAACCATTTGGTGAACCGGGTAGGGAAAATATT
TTAAAACCAAATTTCGTTTTCATTTCCCGGTTGGGGAACC
GenBank Accession BX289127 [GenBank]
Graphic View Graphic view of gene At3g60140
Predicted Position of Insertion Chr3:22220189 - go to primer design
BLAST e Value 3e-60
Hit Clone Code (BAC ID) T2O9
Hit Gene Code At3g60140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Glycosyl hydrolase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37