SimpleSearch - Line and FST details


Line specific information

 
Line ID 426C05
Vector Used pAC161
Line Availability available as T3 set from NASC (N440829)
Segregation Analysis 50:50:49
Confirmed for Hit At1g69380 At2g28500
Parent of DUPLO pair 12317
Parent of pair(s) none

Gene hit At1g69380

 
Sequence (A. th genome BLAST matches underlined) 
>35-K018075-022-426-C05-8409
TGATCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGCCGCCGCTGCCG
CTTTGCACCCGGTGGAGCTTGCATGTTGGATTCTACCCAGATCTGAGCCGGGTAAAGATA
AGAAATTTCTATTTTAATTTCATTGAATGAGCAAATGGAGAGCAGTAACTGCTCTTCTTC
TTCGTAATCAATTACTCAATTCTTCAAAAAGACTAAACCTTTCTTCTTCTCCATGAGTTT
CGAAACACCCTACGATTGGTTTAACTTCTCGCTATCTCATTTTCCGACACTTTTCAGCGT
TCCCTTCTCCGATTTCGATTTACAACAATGACTCTGATTCTGGGTCGAATGATGCATATC
AAAACTATGAATTTGGAACAGAGGCAGAGGAAGCACTATGGGAT
GenBank Accession BX289420 [GenBank]
Graphic View Graphic view of gene At1g69380
Predicted Position of Insertion Chr1:26083455 - go to primer design
BLAST e Value 1e-130
Hit Clone Code (BAC ID) F23O10
Hit Gene Code At1g69380 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sporulation protein (DUF155)
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g28500

 
Sequence (A. th genome BLAST matches underlined) 
>35-K018095-022-426-C05-8409
GGACATGAAGCATTTACATTGAATATATGCAAATTGATATTTCCCGGATATTTATTATAA
TCATGTGAACTTACCAGAATCGCATAGAACAGATGCTGTTAATATGTCATGGTACTATGA
AGCCGGAGCTATGGGATCTCCGCTATTGTGAGATACCAATTCAGTGTAGCCCATTACCTT
ACATAATTCACTCAAATGCTATGGGATCCCCCCTATAGTGAG
GenBank Accession BX289421 [GenBank]
Graphic View Graphic view of gene At2g28500
Predicted Position of Insertion Chr2:12187020 - go to primer design
BLAST e Value 4e-10
Hit Clone Code (BAC ID) T17D12
Hit Gene Code At2g28500 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation LOB domain-containing protein 11
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37