SimpleSearch - Line and FST details
Line specific information
| Line ID | 429B07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N441107) |
| Segregation Analysis | 50:47:39 |
| Confirmed for Hit | At3g16260 |
| Parent of DUPLO pair | 1134 |
| Parent of pair(s) | none |
| Note |
Gene hit At3g16260
| Sequence (A. th genome BLAST matches underlined) | >50-K114676-0022-429-B07-8409 AGACTTGAGAGGAGAAATCCGAAAAGGCTTATGTTTTGAGGCATTGATGAAGTTAACCTT TTTCACTCTGCTTAGCTGCTCTGCCGCTAGTACTTTCATTTTATAATAACGCTGCGGACA TCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATTGACC ATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATA TCCGAAGAAGACTTGAGAGGAGAAAATCCGAAAAGGCTTAGGTTTTGAGGCATTGATGAA GTTAACATTTTTCCTCAAGCTAACCTGCCCGGCC |
| GenBank Accession | HE664653 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:5509700 - go to primer design |
| BLAST e Value | 2e-37 |
| Hit Clone Code (BAC ID) | MYA6 |
| Hit Gene Code | At3g16260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tRNAse Z4 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | HE664652 [GenBank] HE664652 [GenBank] |
Gene hit At2g07739
| Sequence (A. th genome BLAST matches underlined) | >50-K018078-022-429-B07-8409 TGATCTGTAGATTTCCCGGACTGAAGCCATTTACATTTGACTATGCGAAGAACACTTGAG AGAGAGAAAATCCCACAAGGCTTATGAATTGGACGGTTTGATGAAGTTAACATTCTTCAC TCAAGATATCGAACATATGCAGGATGATGGATTATTCAGACGTTGTGTTCCGACTCTATT CTGGAGTCCTGACCACTTTCTGCATAGGGCCCACTAATCGCTTCCTTCTCCAAGCTCCGG TTATGGACGAAGGAGATCACTGAACCGATCCTACCTTATCAGCGACAACAGGTTTTATTG CGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATTTAGCATTGGGTA GACCTCATACAATAACTGTCCTATGGGATCCTCCTTATAGTGAGAGAGAACAAGAAAGAG TATTTACCAATTTTTTTTCAATTCACAAATGTAGATGTCCGCACCCGTTTTAATACCGCC CTACACGAAACAATGAACCCATGCATATACCATTGCCAAACCCTCACCTCGACGCACTAT GCTGTCGCTCCCCATAACTATTTTTTTGCCAATCCCCCTTTCTTCCCCACCCCTTTTCCT ATCCTTACCTTAAAACTACTCAATATCCTTTTTCTTCTTTCTACTCCCTCTATACAACAC CCAAACTTTCTGACGCCTTTGGATTATTATGCCACCTCCCAAATTACTTTTCCACCCCAC TTCTTCCCCCCTTTAACTCCCACCCCCTTTGTCCGTTTGTACCCGCCCCACCTCATCCTA CCCTTACGATGCCGCCCCGTCGCCAAACAATCGTAAATTGCGCCGCCGACACCCTATATT CCTCATTCCCACCCCCGAAGTCTTACACAACAAACACACAATCAAAT |
| GenBank Accession | BX289663 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:3496147 - go to primer design |
| BLAST e Value | 3e-63 |
| Hit Clone Code (BAC ID) | T5E7 |
| Hit Gene Code | At2g07739 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ycf1 protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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