SimpleSearch - Line and FST details
Line specific information
Line ID | 430F02 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N441246) |
Segregation Analysis | 50:49:41 |
Confirmed for Hit | At1g28560 At5g19620 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At1g28560
Sequence (A. th genome BLAST matches underlined) | >14-K018170-022-430-F02-8409 GATCATGAGATTTCCCGGACATGAAGCCATTTTACAATTGGTAATTTTTCTGTCATCTTC ATTACCTCAGTATTCTTTAGTGTCCTCTTCTTTACCTCGGTATTCTTTACTGTCCTCTTC CTTTTTGCCCTCCCAGCTAATGGATTTTCACTGCAGCATACCGAGAAGGTAACTGTTTGT TATCGTTCTACAATTGTCTACGTCAACCATACTTTGTCTCTGGAAGATTTCTAATCATGA CTAAGCTATTAACATATATATTGTCTACAAGACTTTCGAAATATATTGGGAGCTATGGGA |
GenBank Accession | BX289814 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:10039785 - go to primer design |
BLAST e Value | 5e-139 |
Hit Clone Code (BAC ID) | F3M18 |
Hit Gene Code | At1g28560 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | snRNA activating complex family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At5g19620
Sequence (A. th genome BLAST matches underlined) | >14-K018148-022-430-F02-8409 TGATCTGAAATTTCCCGGACATGAAGCCATTTACTACTTAATATATACTGCTGCTCTTAC ATATTCGATTCTCTACTCTTTTTACTCGGGATCTCTACTATATCAAGTGATTCAAGGGAT CTCTCGAATCGCCGCACTCCTCCGACACTNTCGGTTCGGCGACCCAATTTACCGACTCAG ATGCTCAATTCAGTAACCCAGCTTATGATTGGGAAGTCTTCTCCAATTTCATTGTCTCTT ATCCAATCCACCCAATTCAATTGGTCTGAATCAAGAGATGAGAACGTTGAGACAATCCGT GGACTAAGCTCGCCTCTGCTCTGTTGTGCCTCTTTGTCTCTAACTATGGGATCCTCCCTA TAGTGAGACTATGGGATCCTCCCTATAGTGAGCCTATGGGATCCTCCNTATAGTGAGACA AGAGAATACTGAATCGAGAGGAAAGTTTCGGGCCCAACTGGTTTTATTGCGGGACAGCTC ATGATGTTCATATCGATCTATTATGCGCCTCTGCATTTAGCATTGGGTAGACCTCATACA ATAACTGTCCTA |
GenBank Accession | BX289813 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:6623429 - go to primer design |
BLAST e Value | 1e-105 |
Hit Clone Code (BAC ID) | T29J13 |
Hit Gene Code | At5g19620 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | outer envelope protein of 80 kDa |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |