SimpleSearch - Line and FST details


Line specific information

 
Line ID 433D08
Vector Used pAC161
Line Availability available as T3 set from NASC (N441516)
Segregation Analysis 50:42:26
Confirmed for Hit At5g54040
Parent of DUPLO pair none
Parent of pair(s) 3683, 9755, 11169, 91571, 91575
Note

Gene hit At5g54040

 
Sequence (A. th genome BLAST matches underlined) 
>60-K018151-022-433-D08-8409
TGTCATGTAGATTTCCCGGACTGAAGACATTTACTTAAATACATGCGCTATTGGATGATC
GACTATTATGAGACTGATGATGCTGAATGACTGCTCTTCAGGAGCAATATGAATGATATC
TCCCACCCACAGCAATTAACGCGAATGAAGCTATCTACTTCCTTCTTCTTCTGCGGGCAC
AATCTTCCACCTCTAATGCAACCTTTATTGCATATCTATGATACTCACTCTGTCATCGAC
AGGTAACTGTTGTTTGACAGCTAAAGCTTGTGACATAAAAACTAATGGTTTCATTTACGA
GTGTCTTCATGAAGGTTGCAAAAGTATTAGTTTTACGTACGATGTTCGGTGTAGTTCTGT
ATCGGAACCGTTTCACCATGATCTGCATCAACATCCCTTATATTTTACGTTGGAGAAAAC
CAATAAATGTCACGCTTGTAAAAGAAAAATAGATTGGAATCCCTTGAATTGTACGGTTTG
TGATGATTACTCTTTATGCACGAGGTGCGCTGCTTTACCAAGAAAGGTAAAACACAGATG
TGATGATCATTATCTGTCACTATGTCAAGGTGTGGGAAGTGCAAGTGGTGACTTGTGGTG
TGATATTTGTGAGACCAAGACAGACCCGAGTGTATTTTACTATACTTGGGATGATTGGGG
GCTAAGTCTCCTATTGATTGGGTAACTTGGGGATTGCTTTTATACAAAGTCGGATGCCCA
GGTCC
GenBank Accession BX290130 [GenBank]
Graphic View Graphic view of gene At5g54040
Predicted Position of Insertion Chr5:21929734 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K19P17
Hit Gene Code At5g54040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cysteine/Histidine-rich C1 domain family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g55550

 
Sequence (A. th genome BLAST matches underlined) 
>60-K018173-022-433-D08-8409
ATGAATGATATCTCCCTTTTCATTAATAACCTTGGGTGCGTCTTCGACGTCTACCGTCAT
CTTCCGGATCATCAATATAGCTCAAATCCATACCCACACTTACAGAGCTTGTTGCACATC
TCGTATGAACGGAATAGCTGTGGGATCCTCCCTATAGAGACACCATACTCGAGGACATAC
TGTTTATATCGATTCCTACATGGTTATCATTAATGTCCTCAAACTCCAAATCCCTGACAG
TATCGAATTCCACAGCGAATAATTGGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX290131 [GenBank]
Graphic View Graphic view of gene At3g55550
Predicted Position of Insertion Chr3:20601352 - go to primer design
BLAST e Value 4e-41
Hit Clone Code (BAC ID) T22E16
Hit Gene Code At3g55550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Concanavalin A-like lectin protein kinase family protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 405B10


Last Updated on 10.06.2021 13:37