SimpleSearch - Line and FST details
Line specific information
| Line ID | 435H09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N441757) |
| Segregation Analysis | 50:33:27 |
| Confirmed for Hit | At1g17490 |
| Parent of DUPLO pair | 11954 |
| Parent of pair(s) | none |
Gene hit At1g17490
| Sequence (A. th genome BLAST matches underlined) | >72-K018190-022-435-H09-8409 TATCATGAGATTTCCCGGAATGAAGCCATTTACAATTGATATATCGCTGAAACATCGATT CCTTCTCTTCTTTTCTGCTTCCAATCACATTTGTCTTCACCTCTAAAAAAACAACAAAAA CCAAAACCCAGAAACGATCAATGAGATTAAAACAAAAGAGTTGTCTTTTCGCGCCAAATT AACCATCTCCTATGGGATCCTCTNCTATAGTGAGACTATAGTGAGAGNNNNATGCNNATA CNAAGCAACATAAAAAAAAGAAAAGCCGTATTCACTATTGAGTATTGATTGACTATGGGA TCCTCCCTATAGTGAG |
| GenBank Accession | BX290390 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:6009017 - go to primer design |
| BLAST e Value | 8e-24 |
| Hit Clone Code (BAC ID) | F1L3 |
| Hit Gene Code | At1g17490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | epidermal patterning factor-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T1J8
| Sequence (A. th genome BLAST matches underlined) | >72-K018180-022-435-H09-8409 AATAACACAAATCCTTGGGAATGAGTATCTTTTTAGTAATATATGGGATCCTCCCTATGG AGAGATCCTTACAATTTCATTGTCTTTTCTTCTACTGATCAAGGAGAGTTTGAAACTTCG GTCGACGCCACTATGGGATCCTCCNCTATAGTGAGANCTAANAGCATATGCTATGGGATC CTCCCTATAGTGAGAGTATTCACTATTGAGTATTGATTGGCTATGGGATCCTCCCTATAG TGAGAC |
| GenBank Accession | BX290389 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:15447233 - go to primer design |
| BLAST e Value | 2e-30 |
| Hit Clone Code (BAC ID) | T1J8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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