SimpleSearch - Line and FST details


Line specific information

 
Line ID 436C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N441788)
Segregation Analysis 50:50:49
Confirmed for Hit At1g25520
Parent of DUPLO pair 2399
Parent of pair(s) 2927, 2973

Gene hit At2g42520

 
Sequence (A. th genome BLAST matches underlined) 
>27-K018181-022-436-C04-8409
ATTGATATTCAATTGGACATGTAGATTTCAATCTCGTCAAGCATTCTATCGGCCTCATCA
AGAGCTAAAAATCTAATCATCTGCATTGAGACTCTATGGGATCCTCCCTATAGTGAGAGA
GAAAGAGAAAGAGTACTTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGT
TATTATAATCNGCTTTATGATTTTATCTTCTATGGGATGCTCCCTATAGTAA
GenBank Accession BX290416 [GenBank]
Graphic View Graphic view of gene At2g42520
Predicted Position of Insertion Chr2:17706776 - go to primer design
BLAST e Value 3e-26
Hit Clone Code (BAC ID) F14N22
Hit Gene Code At2g42520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation P-loop containing nucleoside triphosphate hydrolases superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g25520

 
Sequence (A. th genome BLAST matches underlined) 
>27-K018191-022-436-C04-8409
TGATCTGANATTTCCCGGACATGAGCCATTTACATTGAATATATCCTGACCCTTTTCTAT
ATCATTGCGGGCACCTTTAGCAAGCTACTCCTTATCACTAGCCGGTTTATGAGCACCTAC
AGATCCTGCCTACAGGCAGCTTCTGATCTCCACATTGTCTATACAAGAGAATGGACCTAT
GGCATCCTCGCTCCACGCTGTAGCGAGAACATATCCTTCACAATCTATGGAGAGAGGTCA
CTGAAACCTCCATGTCACAGCATTCAGAAGAACTTACCATCAGAGCCGATAAACAACCAG
CCAACACAAGTCTCCTATGGGATCCTCCCTATGATGAGAACCTATGGGATCCTCCCTATA
GTGAG
GenBank Accession BX290417 [GenBank]
Graphic View Graphic view of gene At1g25520
Predicted Position of Insertion Chr1:8963096 - go to primer design
BLAST e Value 1e-31
Hit Clone Code (BAC ID) F2J7
Hit Gene Code At1g25520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Uncharacterized protein family (UPF0016)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37