SimpleSearch - Line and FST details


Line specific information

 
Line ID 438C06
Vector Used pAC161
Line Availability available as T3 set from NASC (N441982)
Segregation Analysis 50:47:43
Confirmed for Hit At4g04790
Parent of DUPLO pair 12712
Parent of pair(s) none

Gene hit F14N22

 
Sequence (A. th genome BLAST matches underlined) 
>43-K018214-022-438-C06-8409
TTTCCCGGACTGATATTGCTGATCATATTGTTCTACTTTGTTGATAAAACAATCATTTTC
TTTTTTGGTTTCTTCTTGTTGGGTGCTTGAGAAAATGCAGACTGACTTTCTTCGATGATA
TGTTGTACATCTTTATCATCTTTTGGAATTTTTGACACCAATGCCTTGGCACCTTCTGAA
TCCCCTGCAGCTATGGGATCCTCCCCTATAGTGAGAANNATGCTNCTACNGNNNATGANA
TTGCNNAATATAAAAATTGTGGCTTGATGAGTTCATATAAAAGATATAATAATTATGCAA
ACCAAAATATGTATACGTACGAATCTTCTTTTACCATACGGATCATCGTCGGATACTGCT
TGTCTTTTTCTCTGTTTTTTTCTCCTAAATATCACATATATATTCAATGTGAGAAAGTAT
GAGAAACAGGACAAAATATAGATATTGGTTCGTAAAGTTTTTAGTGGCTATGGGATCCTC
CCTATAGTGAG
GenBank Accession BX290618 [GenBank]
Graphic View Graphic view of sequence BX290618 of line 438C06
Predicted Position of Insertion Chr2:17741100 - go to primer design
BLAST e Value 3e-103
Hit Clone Code (BAC ID) F14N22
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g04790

 
Sequence (A. th genome BLAST matches underlined) 
>04-K118268-0022-438-C06C-oriL
GCCATTTACATTTAAAGTAGTGATTTTGTACAAAATTTCTTTATATTGTAATTATGAAGT
GAAATATTATATGGACGTCCATATTCTGTTGACCAATTAAAAAAAAAAGAATTTTCTTTC
TTTTTTGTTTTTTTGACATCAAATTTATCATTCTTTTCTCAGAACTAAAGTCTTCTATAT
AACAACCTTAAGGAGCTAAGATGAGTCTCCCGCCTAAAGTCAGAACAAGCGTTGTCTTTT
GTCTGGGATATAGTAGTTAGCACCAATCGTCTTTCTCTTACGTGGATTGTCTGCCACAAC
TTCAGCTTTAGCCACCTCTGCTACAACCACTTCTGCCACCTTTGCTACAGCACCCTCTGC
TACAGCCACCTTTGCCTCAACGTCTTCCTCTTCAACAATGTCCTGTGGGTTTCGATTTAC
GGGTTCGATTAGTTTCAAGAGGATGCAGTCAATTCTGATAACTAGATCATCAGTTTCCAA
AAGATCAAGAGGTTTTCGGTATATCATTGGTTCTTGTTTATGGTTTGGCAGGATGTATCA
GGTTCTACTAGCTGCAGGGGATTCAAAAGGTGCCAAGGCATTGATATAAAAAATTCCAAT
AGATGATAAAGATGTACAACATATCATCGAAGAAAGTCGGTCTGCATTTTCTCAAGCACC
CAACAAGAAGAAACCTAAAAAGAATATGAGTGTTTCATCAACAAACTACCGTAAAACATC
TATAAGTTAATATTGTT
GenBank Accession HG968974 [GenBank]
Graphic View Graphic view of gene At4g04790
Predicted Position of Insertion Chr4:2435013 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T4B21
Hit Gene Code At4g04790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Tetratricopeptide repeat (TPR)-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37