SimpleSearch - Line and FST details
Line specific information
| Line ID | 438E07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N442007) |
| Segregation Analysis | 50:50:46 |
| Confirmed for Hit | At1g16400 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 96118, 96121, 96127, 96129 |
Gene hit At1g16400
| Sequence (A. th genome BLAST matches underlined) | >53-K018206-022-438-E07-8409 TGATCTGAGATTTCCTGGACATGAAGCATTTACAATTGATATGTAGCCACAAACAAAACC ATGTGTTTTATTTTGTTAACGAAGCTCATGCATAAACTTACTATGGGATCCCTCCCTATA GTGAGAANAACGATGAAGTAGCTATCCCTGTTTTTCCATCAATGTTGCAGTGTATGCGCC TACCTATTATCTGGATATACCATGAAAGAGATACGATCTCATGAGGCTACTATGAAATAG TTACTCATGGGAGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATACGGA TCGTCCGGGGGACAGATTGAGCTTCATGAGATAGTGAGTGGTCTTAGCTATACACTATTG TATAACTGCCCCAGGAATTTCAATTGCGATTGTATTCGTCACTGTAGGAATTGGGTTCAA GCTTTCCCTATGGGATCCTCCCGATAGTGAGAAGGAA |
| GenBank Accession | BX290639 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5606774 - go to primer design |
| BLAST e Value | 2e-24 |
| Hit Clone Code (BAC ID) | F3O9 |
| Hit Gene Code | At1g16400 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 79, subfamily F, polypeptide 2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g06574
| Sequence (A. th genome BLAST matches underlined) | >53-K018214-022-438-E07-8409 TGATCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATGTAGCCACAAACCAA AACCATGTGTTTTATTTTGTTAACGAAGCTCATGCATAAACTTGCTATGGGATACCTGCC CTATGATGAGAGAAGGAAGCTGAATCAGTTGCTGAAGGAAGCTCAACCTAAAGGCGGGAT CGACACTATCCCGAGAAAGAAGTTCACTTCAAGATGGTCTGAAGAGATAGATTACCCTCC GGAAGAGAAAGAAGCATATTTTGAAGAAAGGGGAATTGAGTATTCTGTTGGAGACCTCTC CAGGGAGGACGCTGATTATGATGATGGTATCAGAGAGGATTATGCAGACCCTCTCTACAG TTCATTTTCTTCTTGATAAGTGTGAGGAGTCAAGCTATGGGATCCTCCNTATAGTGAGCA CNNNAACANATTGGTTATTGGGCGGGTTTTTTTGTAACAAGCGTGCGTGTCGCCCTCTCC GGGGAAAAGATCACCTCTTGTAGAATTATTAGGCGGAAGT |
| GenBank Accession | BX290640 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:3542858 - go to primer design |
| BLAST e Value | 2e-144 |
| Hit Clone Code (BAC ID) | T24C1 |
| Hit Gene Code | At4g06574 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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