SimpleSearch - Line and FST details
Line specific information
| Line ID | 439B11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N442071) |
| Segregation Analysis | 50:45:44 |
| Confirmed for Hit | At1g37150 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6861 |
Gene hit At1g37150
| Sequence (A. th genome BLAST matches underlined) | >82-K018215-022-439-B11-8409 ATAAATACTGAATTTTATGCATCAGCTACTCTGCATCTCTCGCCTGATGGGTCATAACAC ATGCGGTATCATCTCGGCCACAACATATAGTCCACAGGCTACGGTATCCCCCTTGAGGAG AGACATCACTCTTTAGAAGGGTGAAATAAGAATCTCTTAAAAGTAGCACTGCTCTCAACC TTATTGAACCTGGTGTTCCTTCTTGCAAGTGTGGGATTGAATGCGGACTACGAGCAACCG ACCACGTGCTTAACTCGCGGAACTAAAGGACGTTTGCCCTCCATCATACCTACTTAAAAG AGAAGAAATTCTTGGTGCCTTCTTTAAGAAGTTTGAAAATTTCTTTGATCTATTCATGGA ACAAGGTAATGTAATCTTCATCTTTATCACTTTTTAAGGATATTCCACACGGTATTATCT GATCATTTATTTAAATGAGATGAGAGTAAGGGAAATGATCATCTGATTATCTATGG |
| GenBank Accession | BX290703 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:14176515 - go to primer design |
| BLAST e Value | 2e-141 |
| Hit Clone Code (BAC ID) | F28L22 |
| Hit Gene Code | At1g37150 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | holocarboxylase synthetase 2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g57210
| Sequence (A. th genome BLAST matches underlined) | >82-K018207-022-439-B11-8409 TATCCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGAAGAGAAATGTGT AAGTCTATTTTTTCTCCTCTCATTATGCCTCTTTTTTAAAAGAGGGTCAGTCACTCTTCA TACTTTACATAAACATATATATATGAGGCATGATTTTTGTTACTATAACGCGTTACAAAT TATTGACAACATCCACTTGTATGTTATTCTTCTATAAATATTATAATTTTATGCATCAAA AACTCATCAAATTGCCAAATGTTTGATAAAACATACTTTATCAACTCGGTAAAAATATTA TAGTCCACAGACTATGGGATCCTCCTTATAGTGAGANNNNNNNNNNNNNNNNNNTNTTTT TTTTATTTTTTNTAATNNNTTTTNTTTTTNNTTTTNTTTTTNNTGGGNNNTCTTNTTTTN TGGTNTAATATTTTATGTNNAATTGTATNAANATATNAAATTTTTAAATGTNGTANTAGA TTAAGAATGNAATTTGATTTAGAAATAGTGAAAATATATAAAATTCTAGGGAGGTTGTTT TAAGAAATAAGAAAATTTCTTGAAATATCTACATGGAAGGAGGAAAATGTAATCTGCATC TATACAACTTCTAAAGTATACCCCAACACTGAATTTCCCTGATCCTTTAACAAAAACGAT TTATCTAGAAACGGGCAAAGATTATCTAACGAAGTTAACCGATTCTCTCCCACGAATCGT GAGACCTGGCCTGAAACGTCAGAACAAAGCGGACCAACCGTAACAGAGAACATGGACCCA CGAATCTGGGGCAAAACCAGATTTGGTAACCCTCAGTTTTGTGTATGAAAA |
| GenBank Accession | BX290702 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:23184166 - go to primer design |
| BLAST e Value | 1e-148 |
| Hit Clone Code (BAC ID) | MUL3 |
| Hit Gene Code | At5g57210 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ypt/Rab-GAP domain of gyp1p superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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