SimpleSearch - Line and FST details
Line specific information
| Line ID | 439E10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N442106) |
| Segregation Analysis | 50:48:47 |
| Confirmed for Hit | At4g03415 At2g01820 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3453, 3527, 7132, 61245, 93645, 93646 |
Gene hit At4g03415
| Sequence (A. th genome BLAST matches underlined) | >77-K018207-022-439-E10-8409 TGATCTGANATTTCCCGGACATGAAGCCTTTACAATTGAATATATAGTGGGTATTTCTAA CACTATGGTCAACTATTAAGCCGGATTTCTTTGTTGCTTTGTAAGATTTTATGTCTGAAG ATGTGACATTTTGTGGTGTATTTGATGGTCATGGGCCTTATGGCCATCTTGTTGCTCGTA TAGTGAGAGATACCTTGCCTGTGAAGATACTGTTTTTCTTTCGGACGCTTCAGTCGAAGC CTAACTGTTCTAAAGGAACTCGATTCGGAAGAAATTCGAGCAAATCATCTGTCCAAGAAG CTGTTAAAGAAGGATCTGACGAGGATAAACTTACAGGCTTATGGGGAGAAGCTTTCTTGA AATCTTTTAAAGCCATGGATAAGGAACTGCGGTCTCATCCTAATCTGGACTGTTTTTGTA GTGGCAGCACTGGCGTAACAATTCTTAAACAGGTACACTTAGAGAACAAAGAGCTCTCTT TCAGCTTCAACCATGTTTTCTTTAATCATCTCTTTTGATTGTTCAGGGGTCTAATCTCTT CATGGGAAACATCGGGGATTCTCGGGGCATCCTTGGATCAAAAGACAGTAACGATTCTNT GGTGGCAACTCANCTGACAGTTGATCTGAAGCCGGATTTACCTATGGGA |
| GenBank Accession | BX290745 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:1505221 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F9H3 |
| Hit Gene Code | At4g03415 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein phosphatase 2C family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g01820
| Sequence (A. th genome BLAST matches underlined) | >77-K018215-022-439-E10-8409 GTTCTGGATTCTCAATGTCACCGAGGACTCCTACTTCGATGAGATCTGGCGGCTATTGGA TCCTCCCTATTGTGAGACTTAGAGCTTCTCCATCTAGATAGCACAGATAAGGGATCCAAC CAATATCTAGACTCTTTATCTCCACACCAACGTATCCCGATCATAAGTATACTGAGACTG TTCTCTCCCCAGCTCCAGCTGCTACATCGACTCCGATTACTACAGGAAATTTAACTAAGA GTTATCTTCCACGATCGACTCCGTAAATTGTCAAATACCCTGGAGATGATATAGTCAACA ACATGAATAGCTTTTGTACTAATGTAACTGGTGAGGCTTGAGATCCTCGTGTGGATACTT TGGTATCTGTAGCTGAATCATATGGATATCCAGTGAAGCTTGCGAAAAGTTGGACAGGAA ACAATCCTTGAGTTAACTGGGATGCGATTACTTGATCTGAAGGTAACATTACGGTTCGTA ATATGAAGAAACCAGATCTCTCGGGTACAATTTCTCCAATGTTAGCTAGGCTTATTCATT GGAGAACTATCATCTTGCTGAATATAAACTCTTCGGGGATAAACCTGATGAACTTACCAC TTTGTCAAAGCTTAAGGTAACTGATGGGCCTAAAAACAATTTTTTAGGAAATACCGCCAA AGGTTTGGGAAACTGTGACTTTGGGGAATGAAGGGAA |
| GenBank Accession | BX290746 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr2:360099 - go to primer design |
| BLAST e Value | 2e-116 |
| Hit Clone Code (BAC ID) | T23K3 |
| Hit Gene Code | At2g01820 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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