SimpleSearch - Line and FST details
Line specific information
| Line ID | 440H12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N442240) |
| Segregation Analysis | 50:49:34 |
| Confirmed for Hit | At3g46590 |
| Parent of DUPLO pair | 7914 |
| Parent of pair(s) | none |
| Note |
Gene hit At3g46590
| Sequence (A. th genome BLAST matches underlined) | >96-K018216-022-440-H12-8409 TGATCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGTCCTCATTGCAA TCGGCCGCGGTGGCTCCATTCGGCGGCCTCAAATCCATGACTGGATTCCCAGTTAAGAAG GTCAACACTGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAAGTGCATGGTGACG GTGTTCGGCATTCTGAATCTCACCGAGGACTCCTTCTTCGATGAGAGCCGGCGGCTATGG GATCTCCCCTAATAGTGAGAANANANCCTCTNCCTNATTGGATGGGGGCTCACCCTGCAG TTGATGCATTAGGGGTTGGGACCAGAAAGCGGGGGCCTTCAAAACACGGTCCAAAATTTC CTGTGGCACCGGCTCTCCCCTCCGTTGTTGGGGAAATATCCTTGCCGGGGGGACCAGCGT TTTCCACTTATCCTACAAAGGCAAAAACTCATTACCAAACTGTATATTTTAAGGTTAAAA GTTATTTAAAAAACTAACTAACCTTGAAATCAACATAGGTCCAATGGTCTGCGTCCTCAA AAGCACAAACCTTCACATCTCTCCCCCTGTAGTTTTCAAACCCATTTTGTCACCAACATG AAAAAAAGAAAGGGCTATTTCTTTGTTTTGGACCTTCCGGTTCCGAGTTTCTCAACGGCT TGGACCAGGGCTTCTACTTCAGAAACTGAAAAGGGCCAACAAATTCTGCGTTGTGCAGCT A |
| GenBank Accession | FR810296 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:17155938 - go to primer design |
| BLAST e Value | 9e-150 |
| Hit Clone Code (BAC ID) | F12A12 |
| Hit Gene Code | At3g46590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | TRF-like 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g38430
| Sequence (A. th genome BLAST matches underlined) | >96-K018208-022-440-H12-8409 TGATCTGATATTTCCCGGAATGAAGCCTTTACATTGAATATATCCTGGCCTCATTGCTTT CGGACGCGGTGGCTCCATTCGGTGGCCTCAAATGCATGACTGGATTCCCAGTTAAAAATG TCAACACTGACGTTACTTCCATTACAAGCAATGGGGGAATGAGTAAAGTGCATGGTGACG GTGTTCGGCATTCTGAATGTCACCGAGGACTCCTTCTTCGATGAGAGCCGGCGCCTATGG GATCCTCCCCTATAGTGAGAGANAAAAAGAAACAGTAATTACCAGTTTTTTTTCAATTCA AAAATGTATATGTCCGCTGCGTTTTTATAA |
| GenBank Accession | FR810295 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:15385028 - go to primer design |
| BLAST e Value | 0.001 |
| Hit Clone Code (BAC ID) | MXI10 |
| Hit Gene Code | At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribulose bisphosphate carboxylase (small chain) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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