SimpleSearch - Line and FST details


Line specific information

 
Line ID 441A08
Vector Used pAC161
Line Availability available as T3 set from NASC (N442248)
Segregation Analysis 50:34:19
Confirmed for Hit At1g43040
Parent of DUPLO pair none
Parent of pair(s) 11821

Gene hit At1g07360

 
Sequence (A. th genome BLAST matches underlined) 
>57-K018209-022-441-A08-8409
TGATCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGAAGAACCGTTTCA
TAATCATTTACAATTGGTTCCATGAAGAGTCTGCAGTGATTGGCCAATTTCATAAAGAAC
TTTGAGAATATTATTATCACAAATTTCACATTTGCTCGAATCGTTCATTTTTTTTTGAGA
ATTCCACTGATGGGATCCCGCATATAGGGAGATGTCAAGAAATCAGCATCCATCTCTGAC
TTGCATTGTGTATCTGTATCGCTTCCGACATAAACTCGGACTCGACCTTCGTCCGGAAAC
CTATGGGATCCTCCCCTATGTAGAGAACATTGCGACACTATTATGCCGCATCGCTTTCCT
ACGCTTAATGCACTTCACATAATCCGTAATACATTCACGTAACCTATGGGATCCTCCCGT
ATGTGAGAGAAAANGNANGNACTAGGTACCTCCTTCTTTTCGCCCCACTCAGCTGGAAGG
CCCCGGGGGAGATAAAAAAACAAAGCTGTTCCGAAGGGACCAACTTGATCCTCTTCCCC
GenBank Accession BX290899 [GenBank]
Graphic View Graphic view of gene At1g07360
Predicted Position of Insertion Chr1:2260414 - go to primer design
BLAST e Value 4e-44
Hit Clone Code (BAC ID) F22G5
Hit Gene Code At1g07360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At1g43040

 
Sequence (A. th genome BLAST matches underlined) 
>57-K018217-022-441-A08-8409
ATAATTTGAATCTCTCACGCGCACACTTACAGACACAGCCGTATTGAGTAGACCATTTCT
TCTGCGATCTGCATAACACGGACGATATGCCTCCTCACCTAGAGGGGGAAAGAAATCAGC
ATCCATCTCTGACTTGCATTGTGTATCTCTATCGTTTCCGACATAAACTCGGACTCGTCC
TTCGTCCGGTAATCTATGGGATCCTCCCTAATAGTGAGGACACCACCCAAACGTCATTAC
CCCTGACTTCTGCATTCCATTCCGAAAAGATCCCCTAGGCTCGTCTAGGTCGGCTATGGG
ATCCTCCCTATAGTGAG
GenBank Accession BX290900 [GenBank]
Graphic View Graphic view of gene At1g43040
Predicted Position of Insertion Chr1:16184516 - go to primer design
BLAST e Value 2e-39
Hit Clone Code (BAC ID) F2H10
Hit Gene Code At1g43040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SAUR-like auxin-responsive protein family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37