SimpleSearch - Line and FST details


Line specific information

 
Line ID 441E03
Vector Used pAC161
Line Availability available as T3 set from NASC (N442291)
Segregation Analysis 50:39:21
Confirmed for Hit At5g61240
Parent of DUPLO pair 2717
Parent of pair(s) none

Gene hit At5g61240

 
Sequence (A. th genome BLAST matches underlined) 
>21-K018217-022-441-E03-8409
TCTACCAGATGAGACGGTTTTCTTGAAGGTATAGATACCGAAGCTCGGGAAGAGCAGCTA
TGGGA
GenBank Accession BX291956 [GenBank]
Graphic View Graphic view of gene At5g61240
Predicted Position of Insertion Chr5:24631197 - go to primer design
BLAST e Value 7e-21
Hit Clone Code (BAC ID) MAF19
Hit Gene Code At5g61240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat (LRR) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit T13J10

 
Sequence (A. th genome BLAST matches underlined) 
>21-K018209-022-441-E03-8409
TCTCTATTCTTTTATGTACTACGTTTTCTCTTTTTAAAATCTCGATTCATTAGGTACTTG
AATAATAACTATTTGAGTGGAGGGATTCCTGCTCAGCTGTCAAATCTTACAAACTTAGAG
ATTGTGTAAGCAGTCTACACTCTCCATCTCTCTGCAATAAACTATATCACTATGGGATCT
CCCCTATAGTGAGAGNNANNANCNCANNNCTTCCTTCATTGGTTGGTACCCAAAATATAT
GTAGGAGACGGCATTTGGAGTTAACAGGTGGCGAACGTTTTGCTCAGTCCCCAGTTCGGC
AGGAATTCTACCAATGAGACCGTTTTCTTGAAAGTATAGATACCGAAGCTCGGGAATAGC
AGCTAGATTTAGAGTAATTAACTACATCTTGAATCCTTACAATAGATATTCCCGCCATAT
GCATCTGTAGATGGATCTATTATTTGATGAGTCTGGGTTATATGTGTGTACTAAGAATCG
GCCTATCTACTAAGATGGACAATTGAACTCGTTAACAATGCATATTTAGGGAGATAGTTT
CTCGGTTTCTCCGGGTATTATTAGCTGTAGATATAGCGAGTTTTGCGGCACGCCCACCGG
ATATTCCATAATTAAAGTTTGAATTTGAGAAGGGTTCGATAACGACCTAT
GenBank Accession BX291955 [GenBank]
Graphic View Graphic view of sequence BX291955 of line 441E03
Predicted Position of Insertion Chr3:11496541 - go to primer design
BLAST e Value 1e-111
Hit Clone Code (BAC ID) T13J10
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37