SimpleSearch - Line and FST details


Line specific information

 
Line ID 471A09
Vector Used pAC161
Line Availability available as T3 set from NASC (N445129)
Segregation Analysis 50:10:9
Confirmed for Hit At1g79870
Parent of DUPLO pair none
Parent of pair(s) 97197, 97198

Gene hit At1g49740

 
Sequence (A. th genome BLAST matches underlined) 
>65-K019878-022-471-A09-8409
TGTCTGTAATTTCCCGGACATGAAGCCATTACCCTCAAATGCTTCTTGTCCTATTTCACA
TATCATCTGCTCTCAGCGACCCCTGTCTTATCCAGCTTCTAACACTTCCAGTTGGGGGAT
GGCCACTGCTACGACCGGAGCACATACGGTCTTTATTGCGTATGCCAACTCCCACCATAG
AGTCCTCCTGTCACTATCACATATTGGTAGACTGGAATCTAGTCTCAGTCCTATCCTACC
GTTGCGTTCGGCAATCTCTGCTATCCCATCTCTCCTTATCATTCGGTTGGGGATCGCAGG
AAGGAGAAACATCGCATGACGATCATCGACTGAGACGCTGATCACCACTGCGAGACATGT
ATAGCCAACACTGATTTTAGACCTATGGG
GenBank Accession BX530985 [GenBank]
Graphic View Graphic view of gene At1g49740
Predicted Position of Insertion Chr1:18407790 - go to primer design
BLAST e Value 3e-11
Hit Clone Code (BAC ID) F14J22
Hit Gene Code At1g49740 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PLC-like phosphodiesterases superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g79870

 
Sequence (A. th genome BLAST matches underlined) 
>65-K019883-022-471-A09-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTCACCAATTGAATGTAGAGCGATGATAACG
AAGAGTACTGAATCTTAGAAACCTGGCTGGCTTCACCCCGACGCTCAAACCCGCATAATT
TACTGAAGAGAGAGAGAATAAGAAGCGAGTAGCTACTTCATCATCATGGTATGGGATCTC
TCCATCATAGGGAGCTACTGCATACCCAATAATGATCGATGGGATCCTCANCTCTCTGCA
GAATCTTATCTTTGGTCTTCTATCTCTGCTTTAGCGTCACATTCTTTCTTTCTTTTGGTT
GACTCAGTTTAGTGGAAAATCCGTGGGGATCATTGGTCTATGGGATCCTCCCTATAGTGA
GA
GenBank Accession BX530986 [GenBank]
Graphic View Graphic view of gene At1g79870
Predicted Position of Insertion Chr1:30045084 - go to primer design
BLAST e Value 3e-48
Hit Clone Code (BAC ID) F19K16
Hit Gene Code At1g79870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation D-isomer specific 2-hydroxyacid dehydrogenase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37