SimpleSearch - Line and FST details


Line specific information

 
Line ID 476C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N445628)
Segregation Analysis 50:41:32
Confirmed for Hit At5g65400
Parent of DUPLO pair 11919
Parent of pair(s) none

Gene hit At5g65400

 
Sequence (A. th genome BLAST matches underlined) 
>27-K019272-022-476-C04-8409
TGATATGTAGAATTTCCGGACATGAATCCATTTACAATTGAATATATCCTGATCCTTTAT
ATAGACGTATTGTTTCTCTATATATAAAGGATTATTATTGTTTCATTCACATTACATTTA
TATCAACTCACTCTAACCTTCTTTCTTTTACCTATGGGATCCTCCCTATAGTGAGTCGTA
TTACTCACATGTAGTCCTCTATATAAGCCAAACACTCTTCAAAATTCCTATATTCCTTAA
ACCCCTGCAAACACACACACACACAAATCAAATTATGTATACAAACTTAGACCAAATCTC
TCTGTTTTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCATNTNCGNGNGNCNTAT
GNCNAATNGGTATCTGATNTATTCATTGTAAATGGCTCATGGCCGGAAATCTAATGGATC
GCACTGAGTATGATGGGTAATAATGGAGAAAAAAGAAGAGCGAATTCAATTTTTGTTCAT
TCAAAATGTAGATCTCGCAGCTTTATTATAAAANNNN
GenBank Accession BX293204 [GenBank]
Graphic View Graphic view of gene At5g65400
Predicted Position of Insertion Chr5:26132070 - go to primer design
BLAST e Value 6e-37
Hit Clone Code (BAC ID) MNA5
Hit Gene Code At5g65400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation alpha/beta-Hydrolases superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g35710

 
Sequence (A. th genome BLAST matches underlined) 
>27-K019131-022-476-C04-8409
GATATATCCGGAGTCTTTATTTGACATATTGTTTCTCTGTATATAAACGATTATTATTGT
TTCATTCACATTACATTTATATCAACTCACTCTAACCTTCTTTCTTTTACCTATGGGATC
CTCCCTATAGTGAGACTCTCTGATCCGCCCTCTCCCATTTGGACGTGAATGTAGACACCC
CGTGGGAACCTTCTTCTAGACAGAATAATATGACTATTGCTTACACCTATTAATACGACG
GATCGTAATCTCGTCGATCTATCAAAATGTACTTTCATTTTATAATAACGCTGCGGCCAT
CTACTTTTTTGAACGGAGAAGACATCTGTATTTACTCATTCT
GenBank Accession BX293203 [GenBank]
Graphic View Graphic view of gene At2g35710
Predicted Position of Insertion Chr2:15010924 - go to primer design
BLAST e Value 2e-49
Hit Clone Code (BAC ID) T20F21
Hit Gene Code At2g35710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Nucleotide-diphospho-sugar transferases superfamily protein
Insertion Classification TS2TE (3')
Confirmation Status unknown
Other FSTs Supporting this Hit BX293204 [GenBank]


Last Updated on 10.06.2021 13:37