SimpleSearch - Line and FST details
Line specific information
| Line ID | 477H04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N445784) |
| Segregation Analysis | 50:42:33 |
| Confirmed for Hit | At1g30460 At1g13050 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 8987 |
Gene hit At1g30460
| Sequence (A. th genome BLAST matches underlined) | >32-K019132-022-477-H04-8409 TGATCTGTAATTTCCNGGACATNGAGCATTTACAATTGATATATACAGGTATGGTGTTAC CCGGGGTATCATCATTCGTGGCCCCTATAAGTCATAGTTTTCTTTATTTCATATTGGTCA CCAATAGTTGATTGCCTATTCTTGTGCCCTATGGGATACCTCCCTATAGTGAGACAATGA TTTCCTACCTATAATGTTTACTTTTTGTTTTCACCTCAATTTACCACGTATATTTATACA CTTCTATATCAAAATGTCCTATTTATTTATATTAACGAAATGTACTTCTATTTTTATATA ACGCATCAAACTTGGTCATTTTTCCTTCTTTTACTACCTTTTGATAATCACTACTTTTTA CATTTTTTTTTTATTATTACTCACACCTTTCTAATTTACCTTTCGTTTACCCCACACTGA TCACCATACTCAATAACCACACATAGCGAGGGCCGGTGGGGGTTTTCATATTCACAAATG AGTACCCTCCAGTTAACGCCCTCAAGAGAGACACCCATGCCACCGCAAAGATGGAAGAAA GAAGAGCGAAAACAAAGACCGGAGAAGAGAGAACCCCAAAACGAACCGCCGGAAGAGGAG AAGG |
| GenBank Accession | BX293386 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:10773917 - go to primer design |
| BLAST e Value | 2e-15 |
| Hit Clone Code (BAC ID) | F26G16 |
| Hit Gene Code | At1g30460 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cleavage and polyadenylation specificity factor 30 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g13050
| Sequence (A. th genome BLAST matches underlined) | >32-K019250-022-477-H04-8409 TCCGGACATGAGCATTTACATTGATATATACTGGTGAGACTACTCGCAATAAAGCCATTG TGCACCGCACTAGTATGTGATCTTTGTTGCTATATGTATCCTATAGGATCTTGCCTATAC TTGGGCTCTATGGGATCCTCCCTATAGTGAGATTTTTCAATACAGAGATGTTACTGTCCT CTTTCATTTTATAAATGTAAATGTCCGCACCGCTATTATAAAAATTCCNCNCTGTTTTTC TTACACGCAATTGACAATCCCACTTCTTTCGAGATATCAACTTTTAATTCCTATGTCTTG TCCCGAACGGCAGAGTGCAAGGTGGCTACTGACACGGCAAAGTATTTTTTTTTTGGANCG GCGCCGAGGGAGAGAAAGAGGAGAATGAGACCTGATAGAATTATGACGATCAGGAGAATT GCACAGCAGATTGTGGCTGGCAATGTCATGGGTTTGGTCCTCTTTGGGACTTGATGGTAA GCTGG |
| GenBank Accession | FR810866 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:4451366 - go to primer design |
| BLAST e Value | 1e-43 |
| Hit Clone Code (BAC ID) | F3F19 |
| Hit Gene Code | At1g13050 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | proline-rich receptor-like kinase |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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