SimpleSearch - Line and FST details


Line specific information

 
Line ID 485E02
Vector Used pAC161
Line Availability available as T3 set from NASC (N446514)
Segregation Analysis 50:24:21
Confirmed for Hit At2g40925
Parent of DUPLO pair none
Parent of pair(s) 92879, 92880

Gene hit MNL12

 
Sequence (A. th genome BLAST matches underlined) 
>13-K019731-022-485-E02-8409
CTCTTCTTAATCTACTACTGCATATCTTTTTTAATGACTGCTAGGTTATGTATGTATGCC
TTGAAATTTTATCTTTGTTTTTTCGCACCAAGCTTTTATTGTAATGATATATACTTTTTA
TCCTAATATTTTTGCAAATTAAGATCTTTCTTTGTTGATGCAACTTCATTTTTCTTATTT
AAACGTTGCTTTAAATTCTTGGGATACTCCCCCATTATTGGGGGCCCTCCNTTCACNAGG
CCTCATTTGAATCTTTGGTCTTCTGAGACTGTATCTATTATATTTTATGGAGTAGAACAA
TCGTGTCATGCTCCACCATGTTGACGAAGATTTTCTTCTTGTCATTGAATCGTAAGAGAC
TCTGTATGTACTGTTCGCCAGTTTTTACGGCGAGTTCTGTTAGGACCTCTATTTGAATCT
TTGACTCCATGGGAATTGGGGATCCTCTA
GenBank Accession FR810983 [GenBank]
Graphic View Graphic view of sequence FR810983 of line 485E02
Predicted Position of Insertion Chr5:17376181 - go to primer design
BLAST e Value 2e-05
Hit Clone Code (BAC ID) MNL12
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g40925

 
Sequence (A. th genome BLAST matches underlined) 
>13-K019738-022-485-E02-8409
TGATCATGAGATTTCCCGGACATGAAGCCATTTACAATTGAATATTTACCCTGTGCTTCC
CTGTGTCATCACAATCTGTCGTGATCTGCTATCATCACCTGCACCCGCACTCCATCTCTG
TGTAAGGACGCTATTACCACCATCTATATTAATGCCACGCTACTCCTTCGACTATGTTCC
TGACTCTGCTGTGTGACACTAATTCAGACATCATGGGATCGTCTCTATAACCCGATGGGA
TCCTCCCTATAGTGAGACTTTGCAAGACTCCTGCACAAAAAACCATACCCAATACATTTT
GACAATGCGCTACCCACTAACTTATACCCAAACCCTAAGTACTCTTGATCTTACTAATTA
TGAATATGAAGTTCTTTCATGTTTCCCGGTCACTGTTGTTGGAGATATCAAGGAG
GenBank Accession BX531970 [GenBank]
Graphic View Graphic view of gene At2g40925
Predicted Position of Insertion Chr2:17075910 - go to primer design
BLAST e Value 1e-44
Hit Clone Code (BAC ID) T20B5
Hit Gene Code At2g40925 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box and associated interaction domains-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37