SimpleSearch - Line and FST details


Line specific information

 
Line ID 486E03
Vector Used pAC161
Line Availability available as T3 set from NASC (N446611)
Segregation Analysis 100:98:94
Confirmed for Hit At5g07180
Parent of DUPLO pair none
Parent of pair(s) 2875, 3108

Gene hit F21I2

 
Sequence (A. th genome BLAST matches underlined) 
>21-K019573-022-486-E03-8409
ACATAACCGGTTACATTACATTAAACCAAGATAACATAGAACAAGAGAAAGAGAAACAAA
AAGATCCATGTTCTTATAGAAGGATCTATGGGATCCTCCCTATAGTGAGAANATTATGAC
CATGTTCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX532053 [GenBank]
Graphic View Graphic view of sequence BX532053 of line 486E03
Predicted Position of Insertion Chr4:2987220 - go to primer design
BLAST e Value 1e-28
Hit Clone Code (BAC ID) F21I2
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g07180

 
Sequence (A. th genome BLAST matches underlined) 
>21-K019564-022-486-E03-8409
ACTTGATATATCCTGCTGAGCTTGGCCATATCATCAATCTTGATACATTGTATGTTATTT
TCTACTGATTTACATCCATGTTCCGCCTATGGGATCCTCCCTATAGTGAGACTATGTGAA
CCTCCATATAGAGAGATAAACTGATCCGTGATCTCACATAAGGACCTAAGTGATCACCCC
TATAGTGAGACACTTCGGACTAAGAGTAATTTGCCTATTGCGTTACTCCTATAAATCCGA
GAGATCGTAATTCGTCAGATCTATCACACTGGACTTTCATTCTATAATAACGCTGCGGAC
TTCTACATTTTGGAAGGGAACAAGAGATAGGCAATTCTCTCTTTCATTTGCGCCAGATGA
GCCGACATCCAGCTTTGCAGATTATATACAAATTTTCGACACCTAAACTTTGCGGGGGGA
CTGGTGATACAGGCT
GenBank Accession BX532052 [GenBank]
Graphic View Graphic view of gene At5g07180
Predicted Position of Insertion Chr5:2230267 - go to primer design
BLAST e Value 2e-36
Hit Clone Code (BAC ID) T28J14
Hit Gene Code At5g07180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ERECTA-like 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37