SimpleSearch - Line and FST details


Line specific information

 
Line ID 488H09
Vector Used pAC161
Line Availability available as T3 set from NASC (N446845)
Segregation Analysis 50:14:9
Confirmed for Hit At5g55260
Parent of DUPLO pair none
Parent of pair(s) 4721, 4725, 4729, 4732, 4738, 7384, 83729, 83740, 83752, 83763, 83791, 83792, 83794, 83795, 83796, 83797

Gene hit At5g55260

 
Sequence (A. th genome BLAST matches underlined) 
>72-K019586-022-488-H09-8409
CCCTTTTGACGGGTCCTGATGCTTATCACTAGACTAGAGTATATGAGGCTTCCTATTATT
TGCATTGTTACTCAAGAAATAAACCACAAGTCTATTATATCTTTCACAGATCCTAATCAG
TGTGGGCGATAAAATGAATGTGCAATAAAATATCCTATCTATGGGATGCTACACTATAGA
GAGATTATTTGTCTAAGTCTTTCAGCTCTTGTCGAGAACAAGATATTTTGTGTTCATGGA
GGTCTCTCTCCAGCTATTATGACTCTATGGGATCCTCCCCTATAGTGAGATA
GenBank Accession BX532203 [GenBank]
Graphic View Graphic view of gene At5g55260
Predicted Position of Insertion Chr5:22417726 - go to primer design
BLAST e Value 2e-39
Hit Clone Code (BAC ID) MCO15
Hit Gene Code At5g55260 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation protein phosphatase X 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit MIK19

 
Sequence (A. th genome BLAST matches underlined) 
>72-K019566-022-488-H09-8409
TGATCTGAGATTTCCNGGACATGAAGCCGTCTCTTTTGACGGGTCCGATGCTTATCATAG
ACTACAGTATATGAGGCTTCCAATTATTTGCATTTTTACTCAAGAAATAAACCAAAAGTC
TATTATATCTTTCACAGATCCAAATCAGTGTGGGCGATAAAATGAATGTCAATAAAATAT
CCTACCTATGGGATCTCCCCTATAGAGAGATTATTTGTCTAAGTCTTTCAGCTCTTGTCG
AGAACAAGATATTTTGTGTTCATGGAGGTCTCTCTCCAGCTATTATGACCCTATGGGATC
CTCCCCTTATAGTGAG
GenBank Accession BX532202 [GenBank]
Graphic View Graphic view of sequence BX532202 of line 488H09
Predicted Position of Insertion Chr5:22983981 - go to primer design
BLAST e Value 1e-44
Hit Clone Code (BAC ID) MIK19
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37