SimpleSearch - Line and FST details


Line specific information

 
Line ID 492D11
Vector Used pAC161
Line Availability available as T3 set from NASC (N447183)
Segregation Analysis 50:21:13
Confirmed for Hit At1g33811
Parent of DUPLO pair none
Parent of pair(s) 6187, 6253, 10531, 10532, 94542, 94545

Gene hit At1g33811

 
Sequence (A. th genome BLAST matches underlined) 
>84-K019647-022-492-D11-8409
AATCACCTGCATATTCATTATTCCATGCTAGCGATATCTCGCTTGCTTCCAAGTACGATG
TTGGAGTCCGAGCTGAGACATACTTAAAAACCTTCTCCCTTCTACTCAACGGTCAGGGTC
CGTACAAGATATCAAGGATGGATTAACCAGTCTGGCTATGGGATCCTCCCCTATGATGAG
TTTTTTTTCCTTTTTTCCGAACCGATGGTACCAATTGGGACCTCGAAAAGGGATTGGGAC
TGGAGGGGAACAAATCGGTGGCTTACCTTACCAGTTCGCCCGCTACAATAATCGAAACAA
TAGTACGGGCAAAGGCAACGAAAAAATTACCAACGCATTTGGGGGGTTTAACACTCAAGT
CAAGAAGCTAGGGGACC
GenBank Accession BX532553 [GenBank]
Graphic View Graphic view of gene At1g33811
Predicted Position of Insertion Chr1:12268815 - go to primer design
BLAST e Value 2e-39
Hit Clone Code (BAC ID) F14M2
Hit Gene Code At1g33811 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GDSL-like Lipase/Acylhydrolase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g16980

 
Sequence (A. th genome BLAST matches underlined) 
>84-K019641-022-492-D11-8409
TGATCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGCCCATAGGTATT
GTAACAAGTCTCTTGCTTGTGCTCTCCCAAATTCAACATCTTACAAAAAGAGTCAAGAAA
ATGGAAATTTTAACAAAAAGATAAAAGTGTCTGGAATTCAAGAAACTAATCCAAATCACC
TGCATATTCATAATTCCATACGAGCGAAGTCTCGCTTGCTTCGAAGTACGATCTTGGAGT
TCGATCAGTGAAATACTTAAAAACATTCTACGTTATACAAAACAATCAAATCCATAAAAG
ATATAAAGGAAAGATTAACAAGTTTGCCTATGGGATCCTCCCTAAATAGTGAGANNNTTT
TACTATTTTCCCAACCGATGGAACCAATTTGAACTTCGGAAACTGATTGTCACTGAAGGG
AAACATATCGTTTGCAAACCTAACCAATTGGCCCGCTCCAGGGATCCACCCTTTAGGACG
GGCAGATGCAACGAAAAGATTACCAACGCAATGGGGGGGTTTAACACTCAAGTCAA
GenBank Accession BX532552 [GenBank]
Graphic View Graphic view of gene At1g16980
Predicted Position of Insertion Chr1:5810776 - go to primer design
BLAST e Value 1e-158
Hit Clone Code (BAC ID) F6I1
Hit Gene Code At1g16980 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation trehalose-6-phosphate synthase
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37