SimpleSearch - Line and FST details


Line specific information

 
Line ID 492F04
Vector Used pAC161
Line Availability available as T3 set from NASC (N447200)
Segregation Analysis 50:34:32
Confirmed for Hit At1g79650
Parent of DUPLO pair none
Parent of pair(s) 3415, 3426, 8235

Gene hit F17L22

 
Sequence (A. th genome BLAST matches underlined) 
>30-K019647-022-492-F04-8409
TCCCTATTCAGAGGTGGTTCTAACCTATCTATGGGATCCTCCCTATAGTGAGACTTATGG
GACCCTCCCTTTAATGAGATGAGGCTGAGACATATATCTTTGACGGCCCGATACTTAATC
TTCTTTAATGTACAGAGCAGGGTGGGACAAAATTGTATGCTATTAGTTGTTGACAAAAAA
ACATACATATACATATTTAATTTTGTCATCTATTATATATACCATTTTAATCACATATAC
AATTCTGAGCTTAACAATCCATATATGGATGATTTGATGTCTTATGATTTTCCCATGGGA
TCCCGCCTATA
GenBank Accession BX532568 [GenBank]
Graphic View Graphic view of sequence BX532568 of line 492F04
Predicted Position of Insertion Chr4:11551066 - go to primer design
BLAST e Value 2e-92
Hit Clone Code (BAC ID) F17L22
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g79650

 
Sequence (A. th genome BLAST matches underlined) 
>30-K019641-022-492-F04-8409
TGATCTGANATTTCCNGGACATGAAGCCATTTACATTGAATACATGATCTTGTATTTGCT
ATTACATTAGTTCCAAGCAATTACGCATCCATGGTCACATTCCAACCCTCAAATTCTTCT
GGTAAGACTCGCCTATGGGATCCACCCTATAGTGAGACGAGTGCTAACCTCCCTATGGGA
TCCTCCCTATAGCGAGACTATGGGATCCTCACTCTAATGTGGAAACCCCCATTTGCACGT
TTGTGTAAACACTTAAATGATACACCCTCCTAAGTGAACAAATTTGGAAGAG
GenBank Accession BX532567 [GenBank]
Graphic View Graphic view of gene At1g79650
Predicted Position of Insertion Chr1:29973101 - go to primer design
BLAST e Value 3e-23
Hit Clone Code (BAC ID) F20B17
Hit Gene Code At1g79650 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Rad23 UV excision repair protein family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37